Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3632 141 9e-29 seq2168 134 1e-26 >seq3632 Length=73641 Score = 141 bits (156), Expect = 9e-29 Identities = 390/598 (65%), Gaps = 36/598 (6%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| || ||| || || || || | ||| || || || || |||||||| Sbjct 32173 CAAGCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGA 32114 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 |||||||||| ||| || || || | ||| || ||||||||||| |||||| ||||| Sbjct 32113 CCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAA 32054 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 | ||| || ||||||||| | || | | || ||| |||||| | || ||| Sbjct 32053 ACTCCTTCGACTGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGACTTGGTGTCACCG 31994 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC--ATTG--------TTTC 14101 ||||| || ||||||| || ||| || | | | ||| |||| || Sbjct 31993 ATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGGACTGCATTA 31934 Query 14102 AATAGCA--------TTAAATAA---ATATTC-------------CTTCTCTTTAGTACT 14137 ||||| | | ||||| | | || ||| ||||| | | Sbjct 31933 AATAGAAAATCCCTGTACAATAAACGACAATCAACCAGATGCTCACTTTTCTTTTGGATC 31874 Query 14138 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14197 | || |||||||| ||||| | |||||||| ||||||| || ||||| || || Sbjct 31873 TTTGATATATGTATCTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCATTGCAAT 31814 Query 14198 CTGAAAACCATAAAAGCATCTAGCTTCCGACCAT-TGTACTTCCGAGTAAAATCTTTCGG 14256 ||||| ||||| || || | |||||| | | || |||||||| | |||| ||| Sbjct 31813 CTGAATGCCATAGAAACAACGAGCTTCTG-CGATCTGTACTTCTTGGCTGAATCGTTCCA 31755 Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 || ||||| |||||| |||||||| || || |||||||| | | | | || | Sbjct 31754 ACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGA 31695 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTT 14376 ||| | || || ||||| || ||| || | ||||| || |||||||| |||| Sbjct 31694 AGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTT 31635 Query 14377 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATA 14434 | ||||| |||||||| |||||| ||||| || || | ||||||||| | ||| Sbjct 31634 CTTCAACCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGTCATA 31577 >seq2168 Length=109785 Score = 134 bits (148), Expect = 1e-26 Identities = 383/597 (64%), Gaps = 34/597 (6%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| || ||| |||||||| || | | | || || || || |||||||| Sbjct 2823 CAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATGTTAGA 2764 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 |||||||||| ||| || || || | ||| || ||||||||||| |||||| ||||| Sbjct 2763 CCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAA 2704 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 | ||| || || |||||| | || | | || ||| |||||| | || ||| Sbjct 2703 ACTCCTTCGACCGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGACTTGGTGTCACCG 2644 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| || ||||||| || ||| || | | | |||| | ||| |||||| Sbjct 2643 ATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGAATTGCATTA 2584 Query 14112 AATA----------------------------AATA------TTCCTTCTCTTTAGTACT 14137 |||| |||| || ||| ||||| | | Sbjct 2583 AATAGAAAATCCCTACACGAAAAACGACAGACAATAGGCTACTTACTTTTCTTTCGGATC 2524 Query 14138 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14197 | || |||||||| || || | | |||||||| |||||||||||||| | || || Sbjct 2523 TTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAACGCGAT 2464 Query 14198 CTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGC 14257 ||||| ||||| || || | |||||| | || ||||| | |||| ||| Sbjct 2463 CTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGTTCCAA 2404 Query 14258 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14317 || ||||| |||||| |||||||| || || |||||||| | | | | || || Sbjct 2403 CAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGAA 2344 Query 14318 GTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTC 14377 || | || || ||||| || ||| || | ||||| || |||||||| ||||| Sbjct 2343 GTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTC 2284 Query 14378 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATA 14434 || |||||||| |||||| ||||| || || | ||||||||| | ||| Sbjct 2283 TTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGTCATA 2227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479607120537200