Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2168 129 6e-25 >seq2168 Length=109785 Score = 129 bits (142), Expect = 6e-25 Identities = 384/598 (64%), Gaps = 36/598 (6%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| || ||| |||||||| || | | | || || || || |||||||| Sbjct 2823 CAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATGTTAGA 2764 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 |||||||||| ||| || || || | ||| || |||||||| || ||||| ||||| Sbjct 2763 CCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAA 2704 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 | ||| || || |||||| | || | |||| ||| |||||| | || ||| Sbjct 2703 ACTCCTTCGACCGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGACTTGGTGTCACCG 2644 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGA-TTGCATT 13898 ||||| || ||||||| || ||| || | | | |||| || ||| ||||||| Sbjct 2643 ATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGA-TTGCGAATTGCATT 2585 Query 13899 GAATA----------------------------AATG------TTCCTTCTCTTTAGTAC 13924 |||| ||| || ||| ||||| | | Sbjct 2584 AAATAGAAAATCCCTACACGAAAAACGACAGACAATAGGCTACTTACTTTTCTTTCGGAT 2525 Query 13925 TTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTA 13984 | || |||||||| || || | | |||||||| |||||||||||||| | || | Sbjct 2524 CTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAACGCGA 2465 Query 13985 TCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTG 14044 |||||| ||||| ||||| | |||||||| || || || | |||| ||| Sbjct 2464 TCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGTTCCA 2405 Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 || |||||| ||| || |||||||| || || |||||||| | | | | || | Sbjct 2404 ACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGA 2345 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 ||| | || || ||||| || ||| || | ||||| || |||||||| |||| Sbjct 2344 AGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTT 2285 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATA 14222 | || |||||||| |||||| ||||| || || | ||||||||| | ||| Sbjct 2284 CTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGTCATA 2227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478468207587120