Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq584 127 3e-24 >seq584 Length=457511 Score = 127 bits (140), Expect = 3e-24 Identities = 184/253 (73%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 72307 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 72366 || ||||| | || ||||| | ||| ||| |||||| |||||| |||||||| || || Sbjct 419676 CCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAGCGTATCGTAGATGCCTTCGATG 419617 Query 72367 CTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAGTTCCC 72423 ||||| | |||| ||||| |||| ||||| |||| | ||| || | || || Sbjct 419616 CTATCGCTCTTCATCGTTAACAAGAAG-CAGCTGGACAACTGTGGCTTCGGC--GTCCCA 419560 Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483 ||||| || || || || || ||||| || ||||| || | ||||| | || || ||| Sbjct 419559 GCATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTGAGACATCAAATCATATGTC 419500 Query 72484 TCAATAGCTGATTCTATATCCCATT--GATGTATTCCTACCGCGACACGCATTAACATAT 72541 ||||||||| ||| |||| |||| ||| |||||||| | || ||||| | ||||| Sbjct 419499 TCAATAGCTCCTTCAATAT--CATTCATATGAATTCCTACGGACACTCGCATCAGCATAT 419442 Query 72542 GCTGAGGTCTTTC 72554 | |||||||| || Sbjct 419441 GTTGAGGTCTCTC 419429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670970089700080