Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6840 123 3e-23 seq584 102 8e-17 seq2814 86.0 6e-12 seq6576 82.4 8e-11 >seq6840 Length=28952 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || |||||||||||||||||||| | || || ||||| || |||||||| || Sbjct 19600 TGACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCA 19659 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | || | ||||| | || || |||||| | || ||||||||||| || ||| Sbjct 19660 GATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGA 19719 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||||||||| |||||| ||| | | || | ||| || ||| ||| Sbjct 19720 GGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCT 19779 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | ||| | ||| |||||||| | || || ||||| ||||||||| Sbjct 19780 ACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCATA 19830 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| || || | || || ||||| || |||||||| || Sbjct 19831 CCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAT 19890 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | || || |||||| | || ||||||||||| || ||||| Sbjct 19891 AAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGA 19950 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | || | ||| || ||| ||||| Sbjct 19951 ATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACC 20010 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||| |||||||| | |||||| ||||| || ||||| Sbjct 20011 TCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 >seq584 Length=457511 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 157054 GGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTC 157113 || ||| || || |||||||| || || |||||||||||| | ||||| || || || Sbjct 424660 GGAAATGGAAGCAAGATTACAAACAGCTATTTCGTCGGGCGAACTATATTCGACAATCTC 424601 Query 157114 CGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCA 157173 | |||||| ||||||||||| || ||| || |||||||||||||| ||||| Sbjct 424600 GGTACACAAGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGATTGCTTTTGCGATTGCA 424541 Query 157174 AGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 157209 ||||| ||||| | |||| |||| | || ||||| Sbjct 424540 TGCGTCTTTGTAAAGCATGAACGGATTCCCCGTTTC 424505 >seq2814 Length=333951 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| | ||| | || || || || || || |||||||| || || | Sbjct 220984 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 220925 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | || || || ||| | |||| ||||| || || || || |||||||| ||| Sbjct 220924 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 220865 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | || | ||| || ||| ||||||||||| ||| | Sbjct 220864 TCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGATG 220805 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || ||||| || || || ||||| ||||| Sbjct 220804 GTCTTCCCAGTCAAAGTCTTCACAAATATCTGCAT 220770 >seq6576 Length=99650 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| | ||| | || || || || || || |||||||| || || | Sbjct 35488 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 35547 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | || || || ||| | |||| ||||| || || || || |||||||| ||| Sbjct 35548 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 35607 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | || | ||| || ||| ||||||||||| ||| | Sbjct 35608 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTGATG 35667 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || ||||| || || ||||| || ||||| Sbjct 35668 GTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506886645046560