Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2168 134 2e-26 seq584 104 3e-17 seq52 84.2 3e-11 >seq2168 Length=109785 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 || |||||||||| | | ||||||| |||| |||||| ||| || || ||||| Sbjct 2618 AAAGCTCAATGGGCGCTGAACTGGATCGGTGACACCAAGTCGACGTTTGCGGAAAGACTT 2677 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| | || || || || || | ||||| || || |||||||| || ||||| ||| Sbjct 2678 GTGGCTTATGCTGCGGTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTCTGG 2737 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||||| ||||| ||||| || || || ||||| ||| | ||| |||| ||| Sbjct 2738 CTTAAGAAGCGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAACTCGGGAC 2797 Query 125550 GAGGGCCTACACTGTGACTTTGCC 125573 ||||||||||| ||||||||| Sbjct 2798 GAGGGCCTACATACGGACTTTGCC 2821 >seq584 Length=457511 Score = 104 bits (114), Expect = 3e-17 Identities = 200/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 96830 AGTGCCAATGCTCAGAATGTACAATGCAATGTC--ACGATACGTTACACAGGGCGGCAAT 96887 ||| || |||||||| ||| ||| |||| | ||| ||||| ||||| |||||| Sbjct 423829 AGTACCCATGCTCAGGGTGTTCAA--CAATACCGCACGCTACGTCGATCAGGGTGGCAAT 423886 Query 96888 AAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTT 96947 |||||||| || ||| | ||||| ||| | ||||| ||||| |||| ||| | || Sbjct 423887 AAACGGCCCGGTGCTTTCGCCGTGTACCTTGAACCATGGCATCCGGATGTTCAGCAATTC 423946 Query 96948 ATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCA 97007 | || | || |||||| | ||| || || ||||| ||||| ||||| |||| Sbjct 423947 GTTGATTTACGTAAAAACACCGGCGCCGAGGAAATTCGAGCACGGGACCTGTTTCTTGCA 424006 Query 97008 CTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATG 97067 || ||| | || |||||||| |||| |||||| | || || | |||| | ||| Sbjct 424007 CTGTGGATACCGGATTTGTTTATGAGGCGCGTGGAAGATAATGCTGATTGGACGTTTATG 424066 Query 97068 TGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGC 97120 || | || |||||||| || || ||||| || ||||||||||| Sbjct 424067 GATCCACATGAGTGCCCCGGTCTTGAAGACTGTTGGGGGGAGGAGTTTGAGGC 424119 >seq52 Length=434508 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 127228 ATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTATAGTCC 127287 |||||||||||||| | | ||| | | |||||| |||| || ||||| |||||| Sbjct 331447 ATATCGGCCATCAGAATTGCACCGACGGAATCGGCGATCTGACGAAATCGAGCGTAGTCC 331506 Query 127288 AAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCA 127347 ||| |||| ||| |||||| ||||| ||||||| | | ||| ||| ||| || Sbjct 331507 AAGTAGCGAGAATATGCACTGGTACCGGCGATGATTAACTTGGGTCGGAAAAGACGAGCC 331566 Query 127348 CTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATG 127407 || || | | | ||||| | ||||| || | ||||| |||||||||||||| Sbjct 331567 GTCAGAGCCAACTGATCGTAGTCAATCAGTCCGGTGTTCGGATCAACCTTGTACGGCATC 331626 Query 127408 CTTTCGAAAAAGAGTGATGTAGCGGACAC 127436 || ||||| | ||| || || || || Sbjct 331627 GACTCAAAAAATAATGAAGTGGCAGAAAC 331655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740872471608080