Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6840 109 4e-19 seq1875 100 2e-16 seq6576 95.1 9e-15 seq2814 95.1 9e-15 >seq6840 Length=28952 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||||||||| | ||| || ||||| || |||||||| || || | | | | ||| Sbjct 19618 AAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCT 19677 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || |||||||| | || | |||||| ||||| ||||| ||||||||||| Sbjct 19678 TCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 19737 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| || || | || || ||||| || ||||| || | || || ||| Sbjct 19738 TGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTT 19797 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || |||||||||||| Sbjct 19798 TTGCCGGTAAGCGTCTTCACGAAAATTTGCATA 19830 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || || || ||||| || |||||||| || || | | | | ||||| Sbjct 19848 AACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTC 19907 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || |||||||| | || | |||||| ||||| ||||| ||||||||||| Sbjct 19908 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTG 19967 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| || || | || || ||||| || ||||| || | || || ||||| Sbjct 19968 AATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTT 20027 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || || ||||| Sbjct 20028 GCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 >seq1875 Length=193106 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || || || || || || || |||||||| ||| ||||| | || || Sbjct 183858 AACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGAAAGAGTTCTCCCATCCTC 183917 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || || ||| | ||||| || || |||||| |||||||||||||| || Sbjct 183918 CAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGGAATTCCTTCTTTATCCTG 183977 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || || ||||| | ||| || |||| ||| ||||| || Sbjct 183978 TATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCACCTCTAGGGTGATGGTCTT 184037 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || ||||| || ||||| Sbjct 184038 GCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 >seq6576 Length=99650 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || || || || || ||||||| ||||||||||| |||||| ||||| ||| Sbjct 35548 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 35607 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| || ||| || ||| | || || |||||||| |||||| || | || || Sbjct 35608 TCTTGAATCTTCGCT-TTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTGAT 35666 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || |||| || || || ||||| ||||| Sbjct 35667 GGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 >seq2814 Length=333951 Score = 95.1 bits (104), Expect = 9e-15 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || || || || || ||||||| ||||||||||| |||||| ||||| ||| Sbjct 220924 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 220865 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| || ||| || ||| | || || |||||||| |||||| || | || || Sbjct 220864 TCTTGAATCTTCGCT-TTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGAT 220806 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || |||| ||| || ||||| || ||||| || Sbjct 220805 GGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTT 220767 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || || || || || ||||||| ||||||||||| |||||| || || ||| Sbjct 221301 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221242 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| || ||| || ||| | || || ||||| ||| || || || || || || Sbjct 221241 TCTTGAATCTTCGCT-TTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTAT 221183 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| |||| || || ||||| || |||||| Sbjct 221182 CGTCTTACCAGTCAACGTCTTCACAAATATCTGCATA 221146 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || || || || || ||||||| ||||||||||| |||||| || || ||| Sbjct 221529 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221470 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| || ||| || ||| | || || ||||| ||| || || || || || || Sbjct 221469 TCTTGAATCTTCGCT-TTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTAT 221411 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| |||| || || ||||| || |||||| Sbjct 221410 CGTCTTACCAGTCAACGTCTTCACAAATATCTGCATA 221374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362090221398678