Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6840 129 4e-25 seq6576 118 7e-22 seq2814 105 4e-18 >seq6840 Length=28952 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 33139 TTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATC 33198 || ||| || | ||| ||||| || ||||| || || |||||||| || || ||||| || Sbjct 19599 TTGACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTC 19658 Query 33199 AGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 ||| ||| | | || ||||| ||||| ||| ||| |||| |||||||||||| | Sbjct 19659 AGATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGG 19718 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || |||||||| || ||| ||| || | | |||||| || ||| | Sbjct 19719 AGGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTC 19778 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| |||||||| || ||||| || || |||||||||||||| Sbjct 19779 TACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | ||||||||||| || || ||||| ||||| ||| | | || ||| Sbjct 19849 ACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCC 19908 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 || ||||| ||| ||| |||| |||||||||||| | || || |||||||| || | Sbjct 19909 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGA 19968 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || | | |||||| || ||| | || || ||||| |||||||| Sbjct 19969 ATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTG 20028 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| ||||| ||||| || ||||| Sbjct 20029 CCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 >seq6576 Length=99650 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | |||||| || ||||| || || ||||||||||||||||| | | Sbjct 35488 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 35547 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || |||||| || ||||| ||||| | || |||||||| || Sbjct 35548 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 35607 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| | ||| || | | |||||| ||| ||| || || || ||||| || Sbjct 35608 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTGATG 35667 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | || || |||||||| ||||| Sbjct 35668 GTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 >seq2814 Length=333951 Score = 105 bits (116), Expect = 4e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | |||||| || ||||| || || ||||||||||||||||| | | Sbjct 220984 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 220925 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || |||||| || ||||| ||||| | || |||||||| || Sbjct 220924 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 220865 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| | ||| || | | ||||| ||| ||| || || || ||||| || Sbjct 220864 TCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGATG 220805 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || | ||| || || || || ||||| || Sbjct 220804 GTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTT 220767 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | |||||| || ||||| || || ||||||||||||||||| | | Sbjct 221361 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 221302 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || |||||| || ||||| ||||| | || ||||| || || Sbjct 221301 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221242 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| | ||| || | | |||||| || | | | || |||| |||||| Sbjct 221241 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATC 221182 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | || || || || || ||||| Sbjct 221181 GTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | |||||| || ||||| || || ||||||||||||||||| | | Sbjct 221589 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 221530 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || |||||| || ||||| ||||| | || ||||| || || Sbjct 221529 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221470 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| | ||| || | | |||||| || | | | || |||| |||||| Sbjct 221469 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATC 221410 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | || || || || || ||||| Sbjct 221409 GTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318699284113884