Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq6840 98.7 7e-16 seq2814 86.0 4e-12 >seq6840 Length=28952 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || ||||||| || |||||| || || || || || ||| ||| |||| Sbjct 19618 AAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCT 19677 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || || || ||||| || | ||||||||||| |||| | ||||||||| ||| Sbjct 19678 TCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 19737 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||| || | ||| ||||| | ||| || |||| || || ||| Sbjct 19738 TGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTT 19797 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| | |||||||| || |||||||| Sbjct 19798 TTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| ||||| || |||||| || || || || || ||| ||| |||| ||| Sbjct 19849 ACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCC 19908 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || || || ||||| || | ||||||||||| |||| | ||||||||| ||| | Sbjct 19909 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGA 19968 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| ||||| | ||| || |||| || || ||||| Sbjct 19969 ATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTG 20028 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | || ||||| || || ||||| Sbjct 20029 CCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 >seq2814 Length=333951 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || || ||||| ||||| || ||| |||| ||||| || || || ||||| Sbjct 221338 CTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAA 221279 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||| ||||| ||||| | || | || || || ||| ||| || ||| || | Sbjct 221278 TATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATT 221219 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | |||||| || | || || || ||||| || || |||||||| Sbjct 221218 CTCAATCGTATCACTAGCCTCCACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCAC 221159 Query 44110 AAATATTTGCAT 44121 |||||| ||||| Sbjct 221158 AAATATCTGCAT 221147 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || || ||||| ||||| || ||| |||| ||||| || || || ||||| Sbjct 221566 CTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAA 221507 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||| ||||| ||||| | || | || || || ||| ||| || ||| || | Sbjct 221506 TATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATT 221447 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | |||||| || | || || || ||||| || || |||||||| Sbjct 221446 CTCAATCGTATCACTAGCCTCCACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCAC 221387 Query 44110 AAATATTTGCAT 44121 |||||| ||||| Sbjct 221386 AAATATCTGCAT 221375 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || || ||||| ||||| || ||| |||| ||||| || || || ||||| Sbjct 220961 CTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAA 220902 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||| ||||| ||||| | || | ||||| || ||| ||| || ||| || | Sbjct 220901 TATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATT 220842 Query 44050 AGCAACAGTATCTGCCGGC-TCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 | | ||||| || ||| || || || | || || || || || || |||||||||| Sbjct 220841 CTCGATCGTATC-GCTGGCTTCTACTTCAAGAGTGATGGTCTTCCCAGTCAAAGTCTTCA 220783 Query 44109 CAAATATTTGCAT 44121 ||||||| ||||| Sbjct 220782 CAAATATCTGCAT 220770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354690439791384