Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3632 98.7 9e-16 >seq3632 Length=73641 Score = 98.7 bits (108), Expect = 9e-16 Identities = 376/593 (63%), Gaps = 52/593 (9%) Strand=Plus/Minus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| ||| || ||||| || || | ||||| || | |||||||||||| || || Sbjct 32181 ACAACATGCAAGCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAA 32122 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCG 13262 |||||||||| ||||| || || || || |||| ||| || || |||||||| || | Sbjct 32121 ATGTTAGACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGG 32062 Query 13263 aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTT 13322 | || || | |||||| ||||| ||| | || | | ||||| || |||| | | || Sbjct 32061 AGAAGAAAACTCCTTCGACTGCAGCATAAGCCACAAGTCTTTCCGCAAACGT-CGACTTG 32003 Query 13323 TACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 || | ||||| || ||||| | ||||| ||| || || | || ||| Sbjct 32002 GTGTCACCGATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGG 31943 Query 13382 ATTGCGTTAAATA--------------AATAA--------------------tttttttC 13407 | ||| ||||||| ||||| ||||| Sbjct 31942 ACTGCATTAAATAGAAAATCCCTGTACAATAAACGACAATCAACCAGATGCTCACTTTTC 31883 Query 13408 CTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACATTTCTGAATGAATATTTT 13466 || ||| ||||| |||||||| || || | |||||||| || || | ||| | Sbjct 31882 TTTTGGATCTTTGATATATGTATCTAT-AAGCAGAGAGTACATTTCGGAGTGTACATTCT 31824 Query 13467 CCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAA 13526 |||| || || || | ||||| ||||| | ||| |||| | ||| ||||| | | Sbjct 31823 CCATTGCAATCTGAATGCCATAGAAACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGA 31764 Query 13527 ATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGT 13586 ||| ||| | |||||| |||||| || ||||| ||||| ||||| || || | Sbjct 31763 ATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCA--- 31707 Query 13587 GCTTAATAAAttttttttCGTTTTCTGACAACTTTAA-------CCAATCTGGAAAATCT 13639 | || | || | |||| | ||||||| | ||| || | |||||| Sbjct 31706 -CATATGAGATGAAGTGCCGTTCCC---CAACTTTGAGCCGTTCCCAGTCAGTGAAATCT 31651 Query 13640 TTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 || || | ||| || || ||||| |||||||| ||||| || || ||||| || Sbjct 31650 TTCGAAAGATCGACTTCTTCAACCGTCCAAAACGAAGCGACCGCTTTCTTGTA 31598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430876518129516