Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6840 149 1e-30 seq1875 149 1e-30 seq2814 134 3e-26 >seq6840 Length=28952 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| || | |||| || || |||||||| || || |||||| Sbjct 19828 ATACCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCA 19887 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | || ||||| | || || |||||||||||||| | || || || ||| Sbjct 19888 GATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGA 19947 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || ||||| || ||||| || || || | ||||| || | ||| Sbjct 19948 GGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCT 20007 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || ||||||||||| || || |||||||| Sbjct 20008 ACCTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| |||||| || || |||||||| || || |||||||||| ||| | || ||||| Sbjct 19621 ACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCC 19680 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || || |||||||||||||| | || || || ||||| || |||||||| || ||| Sbjct 19681 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGA 19740 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| || || || | ||||| || | |||||||| || || || || || Sbjct 19741 ATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTG 19800 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || ||||| Sbjct 19801 CCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 >seq1875 Length=193106 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | || ||||| ||||||||||| || || Sbjct 183838 ATTCCACCGCGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCC 183897 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || | || || || || ||||| | | ||| || || ||| Sbjct 183898 GAAAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGA 183957 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||||||||| ||||| || || ||||| || | ||||| || ||| Sbjct 183958 GGAATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCC 184017 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| || || | || || |||||||||||||| Sbjct 184018 ACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 >seq2814 Length=333951 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| || || || || ||||| ||||| || ||||| | || | ||| ||||| Sbjct 220978 ACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCC 220919 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || || || ||||| || | | ||||| || || || || ||||| || || ||| Sbjct 220918 AACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGA 220859 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| ||||| || | |||||||| | |||||| || || || || ||||| Sbjct 220858 ATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGATGGTCTTC 220799 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| | || || |||||||||||||| || Sbjct 220798 CCAGTCAAAGTCTTCACAAATATCTGCATCTT 220767 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| || || || || ||||| ||||| || ||||| | || | ||| ||||| Sbjct 221355 ACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCC 221296 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || || || ||||| || | | ||||| || || || || || || || || ||| Sbjct 221295 AACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGA 221236 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| ||||| || | ||||| |||| || || || | ||| || |||||| Sbjct 221235 ATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATCGTCTTA 221176 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || |||||||||||||| Sbjct 221175 CCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| || || || || ||||| ||||| || ||||| | || | ||| ||||| Sbjct 221583 ACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCC 221524 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || || || ||||| || | | ||||| || || || || || || || || ||| Sbjct 221523 AACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGA 221464 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| ||||| || | ||||| |||| || || || | ||| || |||||| Sbjct 221463 ATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATCGTCTTA 221404 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || |||||||||||||| Sbjct 221403 CCAGTCAACGTCTTCACAAATATCTGCAT 221375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151101023297864