Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1875 86.0 5e-12 >seq1875 Length=193106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||| |||||||| | | || | | ||||||| |||||| ||| || || Sbjct 183877 TCCTTCTGAATATTGTAATCCGAAAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAA 183936 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || || |||||||| || || | | ||| || ||| || || ||| | | | Sbjct 183937 ATCAATCGCTGCTGGTCGGGAGGAATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTC 183996 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || ||||| | ||| ||| ||| | || ||||| || || || | ||| |||||| Sbjct 183997 TCGATCGTATCCGAAGATTCCACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACA 184056 Query 48716 AAAATCTGCATCGTG 48730 || |||||||||||| Sbjct 184057 AATATCTGCATCGTG 184071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421147708848158