Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq542 87.8 9e-13 seq14 87.8 9e-13 >seq542 Length=468158 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 22848 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 22907 Query 11528 CC 11529 || Sbjct 22908 CC 22909 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 23384 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 23443 Query 11528 CC 11529 || Sbjct 23444 CC 23445 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 25178 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 25237 Query 11528 CC 11529 || Sbjct 25238 CC 25239 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 25539 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 25598 Query 11528 CC 11529 || Sbjct 25599 CC 25600 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 26782 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 26723 Query 11528 CC 11529 || Sbjct 26722 CC 26721 >seq14 Length=548662 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 306975 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 307034 Query 11528 CC 11529 || Sbjct 307035 CC 307036 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 307372 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 307431 Query 11528 CC 11529 || Sbjct 307432 CC 307433 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 311292 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 311351 Query 11528 CC 11529 || Sbjct 311352 CC 311353 Lambda K H 0.641 0.410 0.925 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261426957986008