Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6840 111 1e-19 seq6576 86.0 6e-12 >seq6840 Length=28952 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| || || || || | ||| || || | ||| | ||| ||| Sbjct 19849 ACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCC 19908 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || || |||| |||| | |||||| ||||||||||||||||||||||| | | Sbjct 19909 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGA 19968 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || || ||| | | || ||| | || || || | ||||| ||||| Sbjct 19969 ATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTG 20028 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| |||||||| ||||||||||| Sbjct 20029 CCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 94790 AATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTG 94849 || ||||| || || || || || || || || || | ||| || || | ||| | Sbjct 19612 AAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGG 19671 Query 94850 GAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| |||| ||| || || |||| |||| | |||||| |||||||||||||||||| Sbjct 19672 CCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCT 19731 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | |||||| || || ||| | | || ||| | || || || | ||| Sbjct 19732 TTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTG 19791 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || ||||| || ||||| || || ||||| Sbjct 19792 ATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 >seq6576 Length=99650 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| || | |||||||| || ||||| || | || ||||| || || Sbjct 35487 TCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACC 35546 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| || || |||| || |||| ||| || ||||| ||||| ||||| || Sbjct 35547 ATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTT 35606 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTG 94969 ||| | ||| || || || || | | || || || ||| || || |||| ||| Sbjct 35607 GTCTTGAATCTTCGCTTTCACATTCTCAATCGTATC-GC-TGGCTTCTACTTCAAGAGTG 35664 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| ||||| | || ||||| || |||||||| Sbjct 35665 ATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448178241824880