Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10667 196 8e-46 seq3281 196 8e-46 seq1311 149 1e-31 seq61 102 1e-17 seq918 98.7 2e-16 seq2107 87.8 3e-13 >seq10667 Length=10256 Score = 196 bits (216), Expect = 8e-46 Identities = 205/267 (77%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| |||||| || ||||||||||| ||||| |||||||| ||| Sbjct 6451 GCTAAGCGGCATCGCAAGGTTCTTCGTGACAACATCCAAGGCATCACGAAGCCAGCCATC 6392 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| |||||||| || || || | || |||||| |||| || |||| | Sbjct 6391 CGCCGTCTCGCTCGCCGTGGTGGTGTGAAACGCATATCCGGATTGATCTACGAGGAGACT 6332 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 |||| ||| ||||| ||||| | ||| |||||| | ||| || || || || || || Sbjct 6331 CGTGGTGTGTTGAAAGTCTTCTTGGAGAACGTTATTCGTGACGCGGTTACA-TACACTGA 6273 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || |||||||| ||| | |||||| | || || || ||||||||||| || Sbjct 6272 GCATGCGAAGCGGAAGACTGTGACCGCAATGGATGTTGTGTACGCTTTGAAACGTCAGGG 6213 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | || |||||||| |||| Sbjct 6212 TCGTACTTTGTACGGTTTTGGTGGTTA 6186 Score = 196 bits (216), Expect = 8e-46 Identities = 205/267 (77%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| |||||| || ||||||||||| ||||| |||||||| ||| Sbjct 8448 GCTAAGCGGCATCGCAAGGTTCTTCGTGACAACATCCAAGGCATCACGAAGCCAGCCATC 8389 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| |||||||| || || || | || |||||| |||| || |||| | Sbjct 8388 CGCCGTCTCGCTCGCCGTGGTGGTGTGAAACGCATATCCGGATTGATCTACGAGGAGACT 8329 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 |||| ||| ||||| ||||| | ||| |||||| | ||| || || || || || || Sbjct 8328 CGTGGTGTGTTGAAAGTCTTCTTGGAGAACGTTATTCGTGACGCGGTTACA-TACACTGA 8270 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || |||||||| ||| | |||||| | || || || ||||||||||| || Sbjct 8269 GCATGCGAAGCGGAAGACTGTGACCGCAATGGATGTTGTGTACGCTTTGAAACGTCAGGG 8210 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | || |||||||| |||| Sbjct 8209 TCGTACTTTGTACGGTTTTGGTGGTTA 8183 >seq3281 Length=215141 Score = 196 bits (216), Expect = 8e-46 Identities = 205/267 (77%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| |||||| || ||||||||||| ||||| |||||||| ||| Sbjct 213125 GCTAAGCGGCATCGCAAGGTTCTTCGTGACAACATCCAAGGCATCACGAAGCCAGCCATC 213184 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| |||||||| || || || | || |||||| |||| || |||| | Sbjct 213185 CGCCGTCTCGCTCGCCGTGGTGGTGTGAAACGCATATCCGGATTGATCTACGAGGAGACT 213244 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGA 16611 |||| ||| ||||| ||||| | ||| |||||| | ||| || || || || || || Sbjct 213245 CGTGGTGTGTTGAAAGTCTTCTTGGAGAACGTTATTCGTGACGCGGTTACA-TACACTGA 213303 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || |||||||| ||| | |||||| | || || || ||||||||||| || Sbjct 213304 GCATGCGAAGCGGAAGACTGTGACCGCAATGGATGTTGTGTACGCTTTGAAACGTCAGGG 213363 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | || |||||||| |||| Sbjct 213364 TCGTACTTTGTACGGTTTTGGTGGTTA 213390 Score = 140 bits (154), Expect = 5e-29 Identities = 144/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| |||||| || ||||||||||| ||||| |||||||| ||| Sbjct 203004 GCTAAGCGGCATCGCAAGGTTCTTCGTGACAACATCCAAGGCATCACGAAGCCAGCCATC 203063 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| |||||||| || || || | || |||||| |||| || |||| | Sbjct 203064 CGCCGTCTCGCTCGCCGTGGTGGTGTGAAACGCATATCCGGATTGATCTACGAGGAGACT 203123 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGA 16611 |||| ||| ||||| ||||| | ||| |||||| | ||| || || || || || || Sbjct 203124 CGTGGTGTGTTGAAAGTCTTCTTGGAGAACGTTATTCGTGACGCGGTTACA-TACACTGA 203182 Query 16612 GCACGC 16617 ||| || Sbjct 203183 GCATGC 203188 >seq1311 Length=370007 Score = 149 bits (164), Expect = 1e-31 Identities = 183/250 (73%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| ||||||||||| || || || || || || ||||| || ||||| |||||| Sbjct 288347 CTGCGAGACAACATCCAAGGCATAACTAAACCCGCCATACGTCGCCTAGCTCGGCGTGGT 288406 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || || | ||||| ||| | |||||||| | ||| | ||||||||| | ||| Sbjct 288407 GGCGTGAAACGCATTTCTGGGTTGATATATGAAGAAACTCGAGGCGTTTTGAAGGTTTTC 288466 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | |||||| | ||||||| | ||||| || ||||| ||||| || || || Sbjct 288467 TTGGAAAACGTTATTCGTGATGCTGTTACTTATACTGAACACGCGAAACGAAAAACGGTA 288526 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| |||| || || |||| ||||| || || | | ||||| ||||| Sbjct 288527 ACAGCCATGGATGTCGTGTACGCCCTGAAGCGTCAGGGTCGCACTTTGTATGGATTTGGG 288586 Query 16694 AGTTAATCTT 16703 ||| || || Sbjct 288587 GGTTGATTTT 288596 >seq61 Length=544193 Score = 102 bits (112), Expect = 1e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||||||| || ||||||||||| |||| ||| | | | | Sbjct 101000 GCCAAGCGGCATCGCAACGCTCTTCGTGACAACATCCAAGGCGTCACGAAGTCTACCACC 100941 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||| | |||||| | || || || | || |||||| |||| || |||| | Sbjct 100940 CGTCGTCTCGCTAGCCGTGGTTGTGTGAATCGCATATCCGGATTGATCTACGAGGAGACT 100881 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 ||| ||| ||||| ||||| | || |||||| | ||| || Sbjct 100880 GGTGGTGTGTTGAAAGTCTTCTTGGAGGACGTTATTCGTGACGC 100837 >seq918 Length=978140 Score = 98.7 bits (108), Expect = 2e-16 Identities = 170/246 (69%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 16459 AGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGT 16518 ||| ||||||||||| || || || || || || ||||| || ||||| |||||||| | Sbjct 800528 AGACAACATCCAAGGCATAACTAAACCCGCCATACGTCGCCTAGCTCGGTGTGGTGGAAT 800469 Query 16519 CAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATG-TTTTGAAGATCTTCCTCA 16577 ||| | | || || || | |||||||| | ||| | | ||||| || | || Sbjct 800468 AAAGTGCATTTCCGGGCTGATATATGAAGAAACTCGAGGCGTTTTTGCAGGTTCTCTCGG 800409 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | |||||| | || |||| | ||||| || ||||| || || || || || | Sbjct 800408 AAAACGTTATTCGTGCTGCTGTTATTTATACTGAACACGCAAAGCGAAAAACGGTAAAAG 800349 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||| || || |||| | ||| || || | ||||||| ||||| ||| Sbjct 800348 CCATGGATTTCGTGTACGCCCTGAAGCCTCAGGGTCGCACTTTTTATGGATTTGGGGGTT 800289 Query 16698 AATCTT 16703 || || Sbjct 800288 CATTTT 800283 >seq2107 Length=177884 Score = 87.8 bits (96), Expect = 3e-13 Identities = 161/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 ||||| ||||||| |||||| || |||||| || | || ||| || || ||||| Sbjct 83743 AAGCGCCATCGCAAGGATCTTCGTGACAACATCAAAAGCATTGTCAAACCGGCCATCCG- 83685 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 | || ||||| |||||||| | || ||| || |||||| || | || || | |||| Sbjct 83684 CACCTCGCTCGCCGTGGTGGTGCGAAACGTACTTCCGGATTGATCCACGAGGAAACTCGT 83625 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | || ||||| | | | || |||||||| ||| || ||| || | ||||| Sbjct 83624 GGGGTGTTGAAAGTTCCCTTGGCGAACGTTATCCGTGACGCGTTCGCATACATTGAGCAT 83565 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 || || || ||||||| ||| | ||||| | | || || ||||||||||| Sbjct 83564 GCGAAGCGGAAGACTGGCACAGCTGTGGATGTTATATACGCTCCGAAACGTCAAG 83510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056769399494