Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2168 134 2e-26 seq3632 122 1e-22 seq584 109 7e-19 >seq2168 Length=109785 Score = 134 bits (148), Expect = 2e-26 Identities = 238/347 (69%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 33553 TTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 ||||| || |||||| | ||| ||||| || | ||||| ||||||||||| || ||| Sbjct 2537 TTTTCTTTCGGATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATG 2478 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 ||||||| || ||||||| || |||||||| | ||| || | ||||| |||||| Sbjct 2477 TTTTCAAACGCGATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGG 2418 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 | ||||||||| || ||||| ||||| || |||||||| || ||||| || | Sbjct 2417 CTGAATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGC 2358 Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792 |||| | || || | ||| | | | || | ||| ||| ||| |||||| Sbjct 2357 ACATATGAGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTC 2298 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852 || | ||| |||||||| |||||||| || || | || || || || | ||| Sbjct 2297 GAAAGATCGACTTCTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCAT 2238 Query 33853 ATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 33899 || || | ||| ||||| || | || ||||| | | | || ||||| Sbjct 2237 ATTTCGTCATACTGGATGGGTAGGATTACAAACCGAGTAGGGTTTGG 2191 >seq3632 Length=73641 Score = 122 bits (134), Expect = 1e-22 Identities = 235/347 (68%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 33553 TTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 ||||| || |||||| | ||| ||||| || | ||| |||||||| || || | Sbjct 31887 TTTTCTTTTGGATCTTTGATATATGTATCTATAAGCAGAGAGTACATTTCGGAGTGTACA 31828 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 || || || || ||||||| || |||||||| | ||| || | |||||||||||| Sbjct 31827 TTCTCCATTGCAATCTGAATGCCATAGAAACAACGAGCTTCTGCGATCTGTACTTCTTGG 31768 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 | ||||||||| || ||||| ||||| || |||||||| || ||||| || | Sbjct 31767 CTGAATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGC 31708 Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792 |||| | || || | ||| | | | || | ||| ||| ||| |||||| Sbjct 31707 ACATATGAGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTC 31648 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852 || | ||| |||||||| || |||||||| || || | || || || || | ||| Sbjct 31647 GAAAGATCGACTTCTTCAACCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCAT 31588 Query 33853 ATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 33899 || || | ||| ||||| || | || ||||| | | | || ||||| Sbjct 31587 ATTTCGTCATACTGGATGGGTAGGATTACAAACCGAGTAGGGTTTGG 31541 >seq584 Length=457511 Score = 109 bits (120), Expect = 7e-19 Identities = 180/253 (71%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 63501 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATG 63560 || ||||| | || ||||| | ||| ||| |||||| ||| || ||||| || || ||| Sbjct 419676 CCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAGCGTATCGTAGATGCCTTCGATG 419617 Query 63561 CTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAGTTCCC 63617 ||||| |||| ||||| |||| ||||| |||| | ||| || | || || Sbjct 419616 CTATCGCTCTTCATCGTTAACAAGAAG-CAGCTGGACAACTGTGGCTTCGGC--GTCCCA 419560 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 ||||| || || || || || ||||| || ||||| || | ||| | | || || ||| Sbjct 419559 GCATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTGAGACATCAAATCATATGTC 419500 Query 63678 TCAATAGCTGAGTCTATATCC--CATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735 ||||||||| || ||||| ||| |||||||||||| | || ||||| | ||| | Sbjct 419499 TCAATAGCTCCTTCAATATCATTCAT--ATGAATTCCTACGGACACTCGCATCAGCATAT 419442 Query 63736 GCTGAGGTCTTTC 63748 | |||||||| || Sbjct 419441 GTTGAGGTCTCTC 419429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622790232879280