Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq584 105 2e-17 seq3632 102 2e-16 seq2168 102 2e-16 >seq584 Length=457511 Score = 105 bits (116), Expect = 2e-17 Identities = 264/394 (67%), Gaps = 8/394 (2%) Strand=Plus/Plus Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 |||||| |||||||| ||||| || || || ||| | || |||| || | ||||| Sbjct 425404 AGCGCCTATGCCCACAGCTTCGACAGCGCAAATCTTGGGTAACACGGAAGCCACTGAACC 425463 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 | || || || |||| ||||| || || || || || |||| || | ||| Sbjct 425464 GCAGACCAGTAACGTTTACTCACGACGTGTCCTAAGTGGCGAGTTTCAAATAATCAATCC 425523 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGG-CTGTGGGGTGACAGCATGAAGAACTATA 364927 |||||| ||| ||||| | | |||| |||||| || | ||||| | Sbjct 425524 ATACCTACTCAGAGATCTAATCAAG-GCGGAACTGTGGTCCGAAGACCTGAAGTCGGCAA 425582 Query 364928 TCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC-AGAAGATCTGAAGCCT 364986 | | ||| | || || | || |||| ||||| | ||| | ||||| |||| || Sbjct 425583 TTGTTGCCAACCAGGGCTCGATTCAACACAT-CCAGGGTATCCCACAAGATATGAAACCC 425641 Query 364987 ATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGC 365046 | ||||| ||||||||||| || || | ||| ||||| |||||||| || |||||| Sbjct 425642 CTGTACAAGACCGTATGGGAGATATCACAGAAAACGCTCATCGATATGGCCGCGGATCGC 425701 Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCG-- 365104 || | ||||| || ||||||||||| ||| | | |||| | || || | || | Sbjct 425702 GGCCCGTTTATTGACCAAAGCCAGTCGTTAAACCTGTACATGGCCCAACCGAGCTATGGT 425761 Query 365105 CCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | || | ||| ||||||||||||||| ||||| Sbjct 425762 CGAA--TCACAAGCATGCATTTCTACGGCTGGAA 425793 >seq3632 Length=73641 Score = 102 bits (112), Expect = 2e-16 Identities = 149/204 (73%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 22450 TGGGCGCTGAAATGGA----TGA-ACAATGAACGTTCATTCGCGGAACGTCTTATTGCAT 22504 ||||||||||| |||| ||| || | | || | || |||||| | ||| | || | Sbjct 31977 TGGGCGCTGAACTGGATCGGTGACACCAAG-TCG-ACGTTTGCGGAAAGACTTGTGGCTT 32034 Query 22505 TTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTG-TGCAATCTTTTGGCTaaaa 22563 ||||| || ||||| ||||||| || || | ||||| ||||||||| ||||| || Sbjct 32035 ATGCTGCAGTCGAAGGAGTTTTCTTCTCCGG-GAGTTTTGCTGCAATCTTCTGGCTTAAG 32093 Query 22564 aaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGT 22623 || || | | | ||||| |||||||| ||| |||||| |||| || || || || ||| Sbjct 32094 AAGCGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAAGTCGCGACGAAGGT 32153 Query 22624 CTTCATACCGATTTTGCGTGTATG 22647 || ||||| || ||||| || ||| Sbjct 32154 CTACATACGGACTTTGCTTGCATG 32177 >seq2168 Length=109785 Score = 102 bits (112), Expect = 2e-16 Identities = 149/204 (73%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 22450 TGGGCGCTGAAATGGA----TGA-ACAATGAACGTTCATTCGCGGAACGTCTTATTGCAT 22504 ||||||||||| |||| ||| || | | || | || |||||| | ||| | || | Sbjct 2627 TGGGCGCTGAACTGGATCGGTGACACCAAG-TCG-ACGTTTGCGGAAAGACTTGTGGCTT 2684 Query 22505 TTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTG-TGCAATCTTTTGGCTaaaa 22563 ||||| ||| ||||| ||||||| || || | ||||| ||||||||| ||||| || Sbjct 2685 ATGCTGCGGTCGAAGGAGTTTTCTTCTCCGG-GAGTTTTGCTGCAATCTTCTGGCTTAAG 2743 Query 22564 aaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGT 22623 || || | | | ||||| |||||||| ||| |||||| |||| | || || ||||| Sbjct 2744 AAGCGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAACTCGGGACGAGGGC 2803 Query 22624 CTTCATACCGATTTTGCGTGTATG 22647 || ||||| || ||||| || ||| Sbjct 2804 CTACATACGGACTTTGCCTGCATG 2827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303016977163556