Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6840 129 6e-25 seq584 109 5e-19 seq1875 104 2e-17 seq2168 86.0 6e-12 >seq6840 Length=28952 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| ||||||| |||||||||| ||| ||||| || || |||||||| || Sbjct 19603 CCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGAT 19662 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | ||||||||| || | |||| ||| |||||||| ||||| Sbjct 19663 AAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGA 19722 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || || | | ||| | ||||| ||||||| | Sbjct 19723 ATACCTTCTTTGTC-TTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTAC 19781 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||||| ||||| || || || |||||||| ||||| Sbjct 19782 CTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 Score = 118 bits (130), Expect = 1e-21 Identities = 170/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || |||| |||||||| || || |||||||| || Sbjct 19831 CCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAT 19890 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | ||||||||| || | |||| ||| |||||||| ||||| Sbjct 19891 AAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGA 19950 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || || | | ||| | ||||| ||||||| | Sbjct 19951 ATACCTTCTTTGTC-TTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTAC 20009 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC-TTAT 131241 |||| || | ||||| ||||| || ||||| ||||| |||||||| || |||| Sbjct 20010 CTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCATCACGTTAT 20065 >seq584 Length=457511 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 145628 ATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCG 145687 || || || | ||||||||| || | || |||| || |||| || ||||||| Sbjct 424656 ATGGAAGCAAGATTACAAACAGCTATTTCGTCGGGCGAACTATATTCGACAATCTCGGTA 424597 Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 ||||| ||||| |||||||| |||||||| ||||||||||| ||||| | ||||| ||| Sbjct 424596 CACAAGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGATTGCTTTTGCGATTGCATGCG 424537 Query 145748 TCCTTGTAGAGCATGTACGG 145767 || ||||| |||||| |||| Sbjct 424536 TCTTTGTAAAGCATGAACGG 424517 >seq1875 Length=193106 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||||| || | ||| | ||||| ||||| ||||| |||||||| Sbjct 183841 CCACCGCGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGAA 183900 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | ||||| | |||||| || ||| | || || ||||||||||| ||||| Sbjct 183901 AGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGGA 183960 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||||||||| || || || ||| | | ||| | ||||| | || || | Sbjct 183961 ATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCACC 184020 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||| || || || |||||||| Sbjct 184021 TCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 >seq2168 Length=109785 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46111 TGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTT 46170 |||||| |||| |||||| || || |||| || || || | | ||||| | | Sbjct 2627 TGGGCGCTGAACTGGATCGGTGACACCAAGTCGACGTTTGCGGAAAGACTTGTGGCTTAT 2686 Query 46171 GCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACC 46230 || || || || || || || || || |||||||| || ||||| | | || | Sbjct 2687 GCTGCGGTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTCTGGCTTAAGAAG 2746 Query 46231 AAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTG 46290 ||| | ||||| || || || ||||| || ||||| ||| | || ||||||||||| Sbjct 2747 CGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAACTCGGGACGAGGGCCTA 2806 Query 46291 CATACGGACTTTGCGTG 46307 |||||||||||||| || Sbjct 2807 CATACGGACTTTGCCTG 2823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471893864574720