Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6840 84.2 2e-11 >seq6840 Length=28952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| || || || ||||| || || ||||||||||| | Sbjct 19831 CCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAT 19890 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| || ||||| ||| |||| || || || ||||| ||| Sbjct 19891 AAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGA 19950 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| ||||| ||| ||||| | | | || || | || ||| Sbjct 19951 ATACCTTCTTTGTCTTGAATTTTGGCT--TTCACGTTCTCAATCGTATCACTGGACTCTA 20008 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| ||||| ||||| || ||||| || || |||||||| Sbjct 20009 CCTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404988479752420