Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq584 123 3e-23 seq2168 116 5e-21 >seq584 Length=457511 Score = 123 bits (136), Expect = 3e-23 Identities = 183/253 (72%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 63356 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 63415 || ||||| | || ||||| | ||| ||| |||||| |||||| |||||||| || || Sbjct 419676 CCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAGCGTATCGTAGATGCCTTCGATG 419617 Query 63416 CTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAGTTCCC 63472 ||||| | |||| ||||| |||| ||||| |||| | ||| || | || || Sbjct 419616 CTATCGCTCTTCATCGTTAACAAGAAG-CAGCTGGACAACTGTGGCTTCGGC--GTCCCA 419560 Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 ||||| || || || || || |||||||| ||||| || | ||| | | || || ||| Sbjct 419559 GCATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTGAGACATCAAATCATATGTC 419500 Query 63533 TCAATAGCTGAGTCTATATCC--CATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 ||||||||| || ||||| ||| |||||||||||| | || ||||| | ||| | Sbjct 419499 TCAATAGCTCCTTCAATATCATTCAT--ATGAATTCCTACGGACACTCGCATCAGCATAT 419442 Query 63591 GCTGAGGTCTTTC 63603 | |||||||| || Sbjct 419441 GTTGAGGTCTCTC 419429 >seq2168 Length=109785 Score = 116 bits (128), Expect = 5e-21 Identities = 235/346 (68%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 32910 TTTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969 ||||| || |||||| | ||||||||| || | ||||| ||||||||||| || ||| Sbjct 2537 TTTTCTTTCGGATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATG 2478 Query 32970 TTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTA 33029 ||||||| || || |||| || ||||| || | ||| || | ||||| |||||| Sbjct 2477 TTTTCAAACGCGATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGG 2418 Query 33030 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33089 | |||||||| | ||||| ||||| || |||||||| || ||||| || | Sbjct 2417 CTGAATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGC 2358 Query 33090 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33149 |||| | || || | ||| | | | || | ||| ||| ||| |||||| Sbjct 2357 ACATATGAGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTC 2298 Query 33150 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT-CCA 33208 || | ||| |||||||| |||||||| || || | || || || || |||| ||| Sbjct 2297 GAAAGATCGACTTCTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTA-GTATTGCCA 2239 Query 33209 GATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTT 33254 || || | ||| || || || | || ||||| | | | || ||| Sbjct 2238 TATTTCGTCATACTGGATGGGTAGGATTACAAACCGAGTAGGGTTT 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633472340576800