Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1875 122 8e-23 seq6840 120 3e-22 seq2814 111 1e-19 seq6576 98.7 9e-16 >seq1875 Length=193106 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| |||||||| ||||||||||| || || ||||||| | || ||||| || Sbjct 184070 ACGATGCAGATATTTGTGAAGACTTTGACGGGCAAGACCATCACCCTAGAGGTGGAATCT 184011 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || |||||| ||||| || || || |||||||| ||||| || ||| Sbjct 184010 TCGGATACGATCGAGAATGTGAAGGCTAAGATACAGGATAAAGAAGGAATTCCTCCCGAC 183951 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| ||||| || || || || |||| | ||| | |||||| Sbjct 183950 CAGCAGCGATTGATTTTCGCCGGGAAGCAGTTGGAGGATGGGAGAACTCTTTCGGATTAC 183891 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || ||||| || || ||| | || || Sbjct 183890 AATATTCAGAAGGAATCGACTCTCCATCTGGTTCT 183856 >seq6840 Length=28952 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| ||| | ||||| |||| || ||||| | Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19770 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| |||| || |||| ||| ||||||||||| ||||| || ||||| Sbjct 19769 GATACGATTGAGAACGTGAAAGCCAAAATTCAA-GACAAAGAAGGTATTCCTCCAGACCA 19711 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | |||||||| ||||| || || ||||||| || ||| | || ||||| Sbjct 19710 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAA 19651 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || ||||| || || |||||||||| Sbjct 19650 CATCCAGAAAGAGTCAACCTTACATTTAGT 19621 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| ||| | ||||| |||| || ||||| | Sbjct 20057 ATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19998 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| |||| || |||| ||| ||||||||||| ||||| || ||||| Sbjct 19997 GATACGATTGAGAACGTGAAAGCCAAAATTCAA-GACAAAGAAGGTATTCCTCCAGACCA 19939 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | |||||||| ||||| || || ||||||| || ||| | || ||||| Sbjct 19938 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAA 19879 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || ||||| || || || Sbjct 19878 CATCCAGAAAGAGTCGACTCTACACTTGGTTCT 19846 >seq2814 Length=333951 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||||||||| || || ||||||| | ||||| || | Sbjct 220770 ATGCAGATATTTGTGAAGACTTTGACTGGGAAGACCATCACTCTTGAAGTAGAAGCCAGC 220829 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| |||| || || | ||| ||||| ||||| |||||||| ||||| Sbjct 220830 GATACGATCGAGAATGTGAAAGCGAAGATTCAA-GACAAGGAAGGCATTCCACCAGACCA 220888 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || || ||||||| ||| || || |||||||| Sbjct 220889 ACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAA 220948 Query 25178 TATTCAAAAAGAATCCAC 25195 ||| || || || || || Sbjct 220949 TATCCAGAAGGAGTCAAC 220966 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| ||||| | || ||| | ||||||||| | | Sbjct 221147 ATGCAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGT 221206 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| |||| || || | ||| ||||| || || |||||||| ||||| Sbjct 221207 GATACGATTGAGAATGTGAAAGCGAAGATTCAA-GACAAGGAGGGCATTCCACCAGACCA 221265 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || || ||||||| ||| || || |||||||| Sbjct 221266 ACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAA 221325 Query 25178 TATTCAAAAAGAATCCAC 25195 ||| || || || || || Sbjct 221326 TATCCAGAAGGAGTCAAC 221343 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| ||||| | || ||| | ||||||||| | | Sbjct 221375 ATGCAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGT 221434 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| |||| || || | ||| ||||| || || |||||||| ||||| Sbjct 221435 GATACGATTGAGAATGTGAAAGCGAAGATTCAA-GACAAGGAGGGCATTCCACCAGACCA 221493 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || || ||||||| ||| || || |||||||| Sbjct 221494 ACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAA 221553 Query 25178 TATTCAAAAAGAATCCAC 25195 ||| || || || || || Sbjct 221554 TATCCAGAAGGAGTCAAC 221571 >seq6576 Length=99650 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || ||| ||||||| | ||||| || | Sbjct 35702 ATGCAGATTTTCGTGAAGACGTTGACTGGGAAAACCATCACTCTTGAAGTAGAAGCCAGC 35643 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| |||| || || | ||| ||||| ||||| |||||||| ||||| Sbjct 35642 GATACGATTGAGAATGTGAAAGCGAAGATTCAA-GACAAGGAAGGCATTCCACCAGACCA 35584 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || || ||||||| ||| || || |||||||| Sbjct 35583 ACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAA 35524 Query 25178 TATTCAAAAAGAATCCAC 25195 ||| || || || || || Sbjct 35523 TATCCAGAAGGAGTCAAC 35506 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 25035 ATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGA 25093 || ||| | ||||||||| | ||| || || ||| |||| || || | ||| || Sbjct 31536 ATAACATTAGAAGTGGAGGCTAGTGATACGATTGAGAATGTGAAAGCGAAGATTCAA-GA 31478 Query 25094 CAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||| ||||| |||||||| |||||||| || | || ||||| || || || || ||||| Sbjct 31477 CAAGGAAGGCATTCCACCAGACCAACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGA 31418 Query 25154 TGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 || ||| || || ||||||||||| || || || || || | ||| | || || | Sbjct 31417 TGGTCGTACGTTGTCTGATTACAATATCCAGAAGGAGTCAACATTGCATCTCGTACTTCG 31358 Query 25214 GCTAAGAGGAGGAAATT-ATTAT 25235 || | || ||||||| ||||| Sbjct 31357 TCTTCGTGGTGGAAATTGATTAT 31335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433221541872770