Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3632 246 3e-60 seq2168 217 2e-51 >seq3632 Length=73641 Score = 246 bits (272), Expect = 3e-60 Identities = 536/805 (67%), Gaps = 52/805 (6%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || ||||| || | || ||| ||||||| | ||| ||||| || | |||| || Sbjct 32339 ATCGGCAACAAACTCCACATATTGACACATCAATTTACAGTTCATGCCGATCAGACTGAC 32280 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 || | ||| || | ||||| | | ||| | | ||| || ||||||| |||| ||| Sbjct 32279 GGGCAAAGCATCAGAGAAGAACTGATGCTCTACTTGAACAGCATCTTTCATGATTGCTAG 32220 Query 93046 TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 |||| || | || || | | || ||||||| | ||| |||||||| || Sbjct 32219 CACTCGTTCCTTCGAGGGCTTCTTCTTTATGTACTTGTACAACATGCAAGCAAAGTCCGT 32160 Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||||| ||||||||| || ||| | |||||| || ||||||| |||||| | |||||| Sbjct 32159 ATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGACCTGGCATCAGTCC 32100 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 || ||||| ||||| || |||| ||||||||| || || || || | ||||| || || Sbjct 32099 CCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACTCCTTCGACTGC 32040 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG---CTGATCCATTTTAA 93282 ||| | ||||||| | ||| ||||| | | | || || | |||||| || | Sbjct 32039 AGCATAAGCCACAAGTCTTTCCGCAAACGTCG---ACTTGGTGTCACCGATCCAGTTCAG 31983 Query 93283 AGCCCAATCGGCTTT---TTTCTTA-ATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 ||||| | ||||| || | | || | || | | | || || |||||||| Sbjct 31982 CGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCG----GACTGCATTAAATAGAA 31927 Query 93339 AATCTC---------------------------GCTCG-------TCCGAATCTCGTATG 93364 |||| | |||| | | |||| || Sbjct 31926 AATCCCTGTACAATAAACGACAATCAACCAGATGCTCACTTTTCTTTTGGATCTTTGATA 31867 Query 93365 TATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAAT 93424 |||||||| || | |||||| |||||||| || || ||||||||||||||||| || | Sbjct 31866 TATGTATCTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCATTGCAATCTGAATG 31807 Query 93425 CCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTT 93484 || |||||||| | |||||| | |||||| |||||||| |||| || | || ||| Sbjct 31806 CCATAGAAACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAATCGTTCCAACAGGTTT 31747 Query 93485 TCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA--ATATATGCTTTATAAAATGTT 93542 || ||||| ||||| || || ||||| || | | ||||| || || || Sbjct 31746 TCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATG--AGATGAAGTGCC 31689 Query 93543 TCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGA 93602 || || |||| ||| ||||| || | | |||||| ||||||||||||||||| | Sbjct 31688 GTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTCTTCAA 31629 Query 93603 CAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTG 93662 | ||||||||||| || | ||||| ||||| | |||||| || | ||| || || | Sbjct 31628 CCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGTCATACTGGATGG 31569 Query 93663 GAAATATGACAAAACGATTAGGGTT 93687 | | || ||||| ||| ||||||| Sbjct 31568 GTAGGATTACAAACCGAGTAGGGTT 31544 >seq2168 Length=109785 Score = 217 bits (240), Expect = 2e-51 Identities = 537/817 (66%), Gaps = 46/817 (6%) Strand=Plus/Minus Query 92911 CTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCAT 92970 |||| |||| || | |||||| | |||||| | |||||| ||||||| | ||| ||||| Sbjct 3004 CTCGGACAACAAACGATCAGCAATAAATTCCACATACTGACACATCAATTTACAGTTCAT 2945 Query 92971 TCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTC 93030 || | |||| || || | ||| || | ||||| | | ||| | | || || || Sbjct 2944 GCCGATCAGACTGACGGGCAAAGCATCAGAGAAGAATTTGTGCTCCACTTGTACAGCATC 2885 Query 93031 TTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAA 93090 ||||| ||| ||| |||| || | || || | | || ||||||| | Sbjct 2884 TTTCATGATAGCTAGCACTCGTTCCTTCGAGGGCTTCTTCTTTATGTACTTGTACAACAT 2825 Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| |||||||| ||||||| || ||||| || | ||| | |||||| || ||||||| Sbjct 2824 GCAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATGTTAG 2765 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 |||||| | |||||| || ||||| ||||| || |||| ||||||||| || || || || Sbjct 2764 ACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAA 2705 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-- 93268 | ||||| || || ||| | ||||||| | ||| ||||| | | | || || Sbjct 2704 AACTCCTTCGACCGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCG---ACTTGGTGTC 2648 Query 93269 -CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA-TAG 93326 | |||||| || | ||||| | ||||| | | ||| || || ||| | | Sbjct 2647 ACCGATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGA-TTGCGAATTG 2589 Query 93327 CGTTAAATAGGTAATCTC------------------------GCT----------CGTCC 93352 | |||||||| |||| | ||| | | | Sbjct 2588 CATTAAATAGAAAATCCCTACACGAAAAACGACAGACAATAGGCTACTTACTTTTCTTTC 2529 Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 | |||| || |||||||| || | ||| | |||||||| || || | || || | Sbjct 2528 GGATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAAC 2469 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 || || || | || |||||||| | |||||| | ||||||||||||||| |||| Sbjct 2468 GCGATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGT 2409 Query 93473 TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA--ATATATGCT 93530 || | || ||||| ||||| ||||| || || ||||| || | | ||||| Sbjct 2408 TCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAG 2349 Query 93531 TTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGAT 93590 || || || || || |||| ||| ||||| || | | |||||| ||||||| Sbjct 2348 --ATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGAT 2291 Query 93591 CGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTT 93650 ||||||||||| ||||||||||| || | ||||| ||||| | |||||| || | Sbjct 2290 CGACTTCTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGT 2231 Query 93651 GATATTGAATTGGAAATATGACAAAACGATTAGGGTT 93687 ||| || || || | || ||||| ||| ||||||| Sbjct 2230 CATACTGGATGGGTAGGATTACAAACCGAGTAGGGTT 2194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556720484999920