Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6840 168 6e-37 seq6576 150 2e-31 seq2814 150 2e-31 seq3632 96.9 3e-15 seq2168 91.5 1e-13 seq9259 89.7 4e-13 >seq6840 Length=28952 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| |||||| ||||||| || || || ||| Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19770 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| |||||||||||||| || |||||||| || || || Sbjct 19769 GATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 19710 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||||| || ||| ||| || | || || |||||| Sbjct 19709 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAAC 19650 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || ||| |||||||||||||||| || ||||| ||| Sbjct 19649 ATCCAGAAAGAGTCAACCTTACATTTAGTTTTGCGTTTACGCGGTGGT 19602 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || ||||| | ||||| |||||| ||||||| || || || ||| Sbjct 20058 GATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAG 19999 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || | | ||| |||||||||||||| || |||||||| || || || Sbjct 19998 TGATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCA 19939 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||||||| || ||||| ||||| ||||| || ||| ||| || | || || ||||| Sbjct 19938 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAA 19879 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || ||||| || || |||| || ||| | || | || || ||| Sbjct 19878 CATCCAGAAAGAGTCGACTCTACACTTGGTTCTTCGTCTACGTGGTGGT 19830 >seq6576 Length=99650 Score = 150 bits (166), Expect = 2e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 |||| ||||||| ||||| || || || || || || ||||| ||||||||||||| | Sbjct 35710 TTGTGGAGATGCAGATTTTCGTGAAGACGTTGACTGGGAAAACCATCACTCTTGAAGTAG 35651 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 || ||| |||||| | || || | ||| || |||||||||||||| || ||||||| Sbjct 35650 AAGCCAGCGATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCAC 35591 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | || |||||||| | |||||||| || || ||||| || ||| || || | || | Sbjct 35590 CAGACCAACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTG 35531 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| || || || || || || | ||| | ||||||||| | || || ||| Sbjct 35530 ATTACAATATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGT 35475 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22264 GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGT 22323 |||||||| | | ||||| | || || | ||| || |||||||||||||| || Sbjct 31527 GAAGTGGAGGCTAGTGATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGC 31468 Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 |||||||| || |||||||| | |||||||| || || ||||| || ||| || || Sbjct 31467 ATTCCACCAGACCAACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACG 31408 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 | || |||||||| || || || || || || Sbjct 31407 TTGTCTGATTACAATATCCAGAAGGAGTCAAC 31376 >seq2814 Length=333951 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || ||||| || || || || ||||||||||||| ||| || Sbjct 220767 AAGATGCAGATATTTGTGAAGACTTTGACTGGGAAGACCATCACTCTTGAAGTAGAAGCC 220826 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | ||| || |||||||||||||| || |||||||| || Sbjct 220827 AGCGATACGATCGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGAC 220886 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||||| | |||||||| || || ||||| || ||| || || | || |||||| Sbjct 220887 CAACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTAC 220946 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || || | ||| | ||||||||| | || || ||| Sbjct 220947 AATATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGT 220997 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||| ||| | || | |||||||| | | Sbjct 221147 ATGCAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGT 221206 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||||||||||||||| |||||||| || ||| Sbjct 221207 GATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 221266 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | |||||||| || || ||||| || ||| || || | || |||||||| Sbjct 221267 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAAT 221326 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | ||||||||| | || || ||| Sbjct 221327 ATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGT 221374 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||| ||| | || | |||||||| | | Sbjct 221375 ATGCAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGT 221434 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||||||||||||||| |||||||| || ||| Sbjct 221435 GATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 221494 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | |||||||| || || ||||| || ||| || || | || |||||||| Sbjct 221495 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAAT 221554 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | ||||||||| | || || ||| Sbjct 221555 ATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGT 221602 >seq3632 Length=73641 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 117081 GTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATCAAGACCAAAGGT 117140 |||||||| ||||||| || || ||||||||||| || || | | |||| || Sbjct 32043 GTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTCTGGCTTAAGAAGCGGGGA 32102 Query 117141 CTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAAGGTTTACACACC 117200 || ||||| |||||||| ||||| || || ||||| || ||||||||| |||| || Sbjct 32103 CTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAAGTCGCGACGAAGGTCTACATACG 32162 Query 117201 GATTTTGCGTGCATGTACTACAA 117223 || ||||| ||||||| ||||| Sbjct 32163 GACTTTGCTTGCATGTTGTACAA 32185 >seq2168 Length=109785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 117081 GTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATCAAGACCAAAGGT 117140 |||||||| ||||||| || || ||||||||||| || || | | |||| || Sbjct 2693 GTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTCTGGCTTAAGAAGCGGGGA 2752 Query 117141 CTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAAGGTTTACACACC 117200 || ||||| |||||||| ||||| || || ||||| | || ||||| || |||| || Sbjct 2753 CTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAACTCGGGACGAGGGCCTACATACG 2812 Query 117201 GATTTTGCGTGCATGTACTACAA 117223 || ||||| ||||||| ||||| Sbjct 2813 GACTTTGCCTGCATGTTGTACAA 2835 >seq9259 Length=16035 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22264 GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGT 22323 |||||||| | | ||||| | || || | ||| || ||||||||||||||||| Sbjct 16023 GAAGTGGAGGCTAGTGATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGC 15964 Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 |||||||| || |||||||| | |||||||| || || ||||| || ||| || || Sbjct 15963 ATTCCACCAGACCAACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACG 15904 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 | || |||||||| || || || || || || Sbjct 15903 TTGTCTGATTACAATATCCAGAAGGAGTCAAC 15872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419624883061270