Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq457 95.1 2e-14 seq3474 86.0 1e-11 seq393 84.2 4e-11 >seq457 Length=453994 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 354222 GCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 354163 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 354162 CCCACATCGGGC 354151 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 357769 GCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 357710 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 357709 CCCACATCGGGC 357698 >seq3474 Length=127982 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 44114 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 44173 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 44174 CCCACGTCGGGC 44185 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 46603 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 46662 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 46663 CCCACGTCGGGC 46674 >seq393 Length=352657 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 217813 GCTGGCACCAAAAACTC-TGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGC 217871 || |||||||||||||| | ||| || || |||||||| || |||||||||||||| Sbjct 19725 GCAGGCACCAAAAACTCATCTTCT-TGTACGCTCATCCTTACCGAGGGAGACTCAGCCAA 19783 Query 217872 CACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCT 217931 | |||||| |||||||| | || || ||||| || | || ||| | ||||| || Sbjct 19784 ATCCCTGGCAGTAGCTGGTCTCGGTGTTGTTGGTCGGGATAACTACGGTGTTTTCCCACT 19843 Query 217932 CCGTGGTAAGCTGCTCAACGTGCGCGATGCCTC 217964 || || || | || ||||| || || ||||| Sbjct 19844 ACGGGGCAAATTACTGAACGTTCGTGAGGCCTC 19876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027571336092878