Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6840 123 2e-23 seq6576 109 5e-19 seq2814 104 2e-17 >seq6840 Length=28952 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || |||| | |||||||||||||| || || ||||| || |||||||| || Sbjct 19602 ACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGA 19661 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| |||||| | || || ||||| | || ||||| || ||||| ||||| Sbjct 19662 TAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGG 19721 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| ||| || ||| | | |||| || || |||| || || Sbjct 19722 AATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTAC 19781 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | |||||||||||| || || || || ||||| ||||| Sbjct 19782 CTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | ||| || |||| || || ||||| || |||||||| || Sbjct 19828 ATACCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCA 19887 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | || || ||||| | || ||||| || ||||| ||| Sbjct 19888 GATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGA 19947 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| || ||| | | |||| || || |||| || Sbjct 19948 GGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCT 20007 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||||||| || ||||| || || |||||||| Sbjct 20008 ACCTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 >seq6576 Length=99650 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| |||||| | ||| | || || || || || || |||||||| Sbjct 35473 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 35532 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || || || || | || | || |||||||| || Sbjct 35533 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 35592 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| ||| | | |||| || ||| ||| ||| Sbjct 35593 GGAATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCT 35652 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || |||| || || || ||||||||||| Sbjct 35653 ACTTCAAGAGTGATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 >seq2814 Length=333951 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| |||||| | ||| | || || || || || || |||||||| Sbjct 220999 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 220940 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || || || || | || | || |||||||| || Sbjct 220939 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 220880 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| ||| | | || | || ||| ||| ||| Sbjct 220879 GGAATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCT 220820 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || |||| ||| || ||||| |||||||| Sbjct 220819 ACTTCAAGAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCAT 220770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420031183218696