Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2168 96.9 7e-15 seq3632 91.5 3e-13 >seq2168 Length=109785 Score = 96.9 bits (106), Expect = 7e-15 Identities = 220/328 (67%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 |||||||| |||||||||| | | | | | | | ||||| | || || || || || | Sbjct 2627 TGGGCGCTGAACTGGATCG-GTGACACCAAGTCGACGTTTGCGGAAAGACTTGTGGCTTA 2685 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | | || ||||| || | |||||||| || || || | ||||||||||| ||| | Sbjct 2686 TGCTGCGGTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTCTGGCTTAAGAA 2745 Query 42776 GAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | || |||||| || || || || || || || || | |||||||||| || Sbjct 2746 GCGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAACTCGGGACGAGGGCCT 2805 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895 |||| |||||||||||| | |||| | | || | | | | |||||||||||||| Sbjct 2806 ACATACGGACTTTGCCTG---CATGTTGTACAAGTACATAAAGAAGAAGCCCTCGAAGGA 2862 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTC 42955 || || | || ||||| | || || || | | ||| | | ||| || | | | Sbjct 2863 ACGAGTGCTAGCTATCATGAAAGATGCTGTACAAGTGGAGCACAAATTCTTCTCTGATGC 2922 Query 42956 GCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 ||||||| ||| ||||||||||| Sbjct 2923 TTTGCCCGTCAGTCTGATCGGCATGAAC 2950 >seq3632 Length=73641 Score = 91.5 bits (100), Expect = 3e-13 Identities = 219/328 (67%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 |||||||| |||||||||| | | | | | | | ||||| | || || || || || | Sbjct 31977 TGGGCGCTGAACTGGATCG-GTGACACCAAGTCGACGTTTGCGGAAAGACTTGTGGCTTA 32035 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | | || ||||| || | |||||||| || || || | ||||||||||| ||| | Sbjct 32036 TGCTGCAGTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTCTGGCTTAAGAA 32095 Query 42776 GAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | || |||||| || || || || || || || || || | ||||| || || Sbjct 32096 GCGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAAGTCGCGACGAAGGTCT 32155 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895 |||| ||||||||| || | |||| | | || | | | | |||||||||||||| Sbjct 32156 ACATACGGACTTTGCTTG---CATGTTGTACAAGTACATAAAGAAGAAGCCCTCGAAGGA 32212 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTC 42955 || || | || ||||| | || || || | | ||| | ||||| || | | | Sbjct 32213 ACGAGTGCTAGCAATCATGAAAGATGCTGTTCAAGTAGAGCATCAGTTCTTCTCTGATGC 32272 Query 42956 GCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 ||||||| ||| ||||||||||| Sbjct 32273 TTTGCCCGTCAGTCTGATCGGCATGAAC 32300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944101250130080