Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq15946 82.4 6e-11 seq8586 82.4 6e-11 seq3341 82.4 6e-11 seq1985 82.4 6e-11 >seq15946 Length=7233 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 5345 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 5287 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| || ||||||||||| ||| || Sbjct 5286 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 5253 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 5345 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 5287 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| || ||||||||||| ||| || Sbjct 5286 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 5253 >seq8586 Length=26441 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 25273 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 25331 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| || ||||||||||| ||| || Sbjct 25332 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 25365 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 25273 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 25331 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| || ||||||||||| ||| || Sbjct 25332 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 25365 >seq3341 Length=146274 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 80167 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 80225 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| || ||||||||||| ||| || Sbjct 80226 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 80259 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 80167 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 80225 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| || ||||||||||| ||| || Sbjct 80226 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 80259 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 80918 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 80976 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| || ||||||||||| ||| || Sbjct 80977 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 81010 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 80918 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 80976 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| || ||||||||||| ||| || Sbjct 80977 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 81010 >seq1985 Length=371280 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 213726 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 213784 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| || ||||||||||| ||| || Sbjct 213785 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 213818 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 213726 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 213784 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| || ||||||||||| ||| || Sbjct 213785 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 213818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396964851446716