Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2814 131 4e-25 seq6840 127 5e-24 seq6576 122 2e-22 seq1875 114 3e-20 >seq2814 Length=333951 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || ||||| | || || || |||||||| || || | Sbjct 220996 CCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGAC 220937 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| || || ||||| || || || || || || |||| || ||||| ||| Sbjct 220936 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 220877 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || ||||||||||| || || || | |||||| | ||||||| Sbjct 220876 ATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACT 220817 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| |||| |||||| || ||||||||||| Sbjct 220816 TCAAGAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCAT 220770 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || ||||| | || || || |||||||| || || | Sbjct 221373 CCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGAC 221314 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| || || ||||| || || || || || || |||| || ||||| ||| Sbjct 221313 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 221254 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || ||||||||||| || || || | ||| || | || ||| Sbjct 221253 ATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACT 221194 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || |||||||| || |||| ||||| || ||||||||||| Sbjct 221193 TCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || ||||| | || || || |||||||| || || | Sbjct 221601 CCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGAC 221542 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| || || ||||| || || || || || || |||| || ||||| ||| Sbjct 221541 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 221482 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || ||||||||||| || || || | ||| || | || ||| Sbjct 221481 ATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACT 221422 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || |||||||| || |||| ||||| || ||||||||||| Sbjct 221421 TCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 >seq6840 Length=28952 Score = 127 bits (140), Expect = 5e-24 Identities = 150/202 (74%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | | || || || ||||| || || || || || || Sbjct 19867 TCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAA 19926 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || ||||| || |||||||| || || ||||| ||||||||| Sbjct 19927 ATTAGACGTTGCTGG---TCTGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACG 19983 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || ||||| ||||| |||||||| || ||||| || || || Sbjct 19984 TTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTC 20043 Query 288460 ACGAATATCTGCATTATGTTAT 288481 ||||| |||||||| | ||||| Sbjct 20044 ACGAAGATCTGCATCACGTTAT 20065 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | | || || || ||||| || || || || || || Sbjct 19639 TCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAA 19698 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || ||||| || |||||||| || || ||||| ||||||||| Sbjct 19699 ATTAGACGTTGCTGG---TCTGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACG 19755 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || ||||| ||||| |||||||| || ||||| || ||||| Sbjct 19756 TTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTC 19815 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 19816 ACGAAAATTTGCAT 19829 >seq6576 Length=99650 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || ||||| | || || || |||||||| || || | Sbjct 35476 CCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGAC 35535 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| || || ||||| || || || || || || |||| || ||||| ||| Sbjct 35536 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 35595 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || ||||||||||| || || || | |||||| | ||||||| Sbjct 35596 ATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACT 35655 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| |||| ||||| ||||| |||||||| Sbjct 35656 TCAAGAGTGATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 288232 ATGATTCATAC---ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTT 288288 ||| |||||| || |||||| || || | |||||||||||| | || || || Sbjct 31328 ATGTTTCATAATCAATTTCCACCACGAAGACGAAGTACGAGATGCAATGTTGACTCCTTC 31387 Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 |||||||| || || | | ||| || || ||||| || || || || || || |||| Sbjct 31388 TGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAAT 31447 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || ||||| ||| || ||||| || || || || ||||||||||| || || || Sbjct 31448 CGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATC 31507 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 | ||| || | || ||||| | || ||||||| Sbjct 31508 GTATCACTAGCCTCCACTTCTAATGTTATCGTCT 31541 >seq1875 Length=193106 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | || || ||||| | || ||| || || ||||| || || | Sbjct 183840 TCCACCGCGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGA 183899 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | || || || || || || || ||||| |||| ||||| || || Sbjct 183900 AAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGG 183959 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||||||||||| || || || ||||| || || || | ||| ||||| || Sbjct 183960 AATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCAC 184019 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||| |||||| || ||||||||||| Sbjct 184020 CTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179349725497124