Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6576 109 6e-19 seq2814 107 2e-18 seq1875 93.3 5e-14 seq6457 91.5 2e-13 seq1263 91.5 2e-13 >seq6576 Length=99650 Score = 109 bits (120), Expect = 6e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| || | |||||| || |||||| || ||||||||||||| || || || | Sbjct 35488 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 35547 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | |||||| || || ||||| | ||| || ||||| | ||| | || |||||| Sbjct 35548 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 35607 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| | || | ||| | || | | ||| ||||| | ||| || || | ||||| Sbjct 35608 T-CTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTGAT 35666 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 |||||| || || | |||||| || || || ||||| | ||| Sbjct 35667 GGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCATCTCCAC 35708 >seq2814 Length=333951 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| || | |||||| || |||||| || ||||||||||||| || || || | Sbjct 220984 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 220925 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | |||||| || || ||||| | ||| || ||||| | ||| | || |||||| Sbjct 220924 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 220865 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| | || | ||| | || | | ||| ||||| | ||| || || | ||||| Sbjct 220864 T-CTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGAT 220806 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCA 42213 ||| || || || | ||||| ||||| || ||||| |||| Sbjct 220805 GGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTTCA 220765 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| || | |||||| || |||||| || ||||||||||||| || || || | Sbjct 221361 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 221302 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | |||||| || || ||||| | ||| || ||||| | ||| | || ||||||| Sbjct 221301 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221242 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| | || | ||| | || | | ||| || || | ||||| || | || || Sbjct 221241 T-CTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTAT 221183 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || | |||||| ||||| || ||||| Sbjct 221182 CGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| || | |||||| || |||||| || ||||||||||||| || || || | Sbjct 221589 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 221530 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | |||||| || || ||||| | ||| || ||||| | ||| | || ||||||| Sbjct 221529 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221470 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| | || | ||| | || | | ||| || || | ||||| || | || || Sbjct 221469 T-CTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTAT 221411 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || | |||||| ||||| || ||||| Sbjct 221410 CGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 >seq1875 Length=193106 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||||||||| | ||||| | | | || || | |||||| || ||||| Sbjct 183877 TCCTTCTGAATATTGTAATCCGAAAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAA 183936 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | |||||||||||||| || | | || || ||| || || || | || Sbjct 183937 ATCAATCGCTGCTGGTCGGGAGGAATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTC 183996 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||| || |||||||| || | |||||||| |||||||| | ||||| ||| Sbjct 183997 TCGATCGTATCCGAAGATTCCACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACA 184056 Query 42198 AAGATTTGCAT 42208 || || ||||| Sbjct 184057 AATATCTGCAT 184067 >seq6457 Length=42432 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||||| |||| |||| | |||||||||| || || || ||||||||||||| ||||| Sbjct 5336 AAAATGCGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 5277 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||||||| Sbjct 5276 CACCACTATACTACCGAGGA 5257 >seq1263 Length=231788 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| || || || ||||||||||||| ||||| Sbjct 109873 AAAAGTCGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 109932 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||||||| Sbjct 109933 CACCACTATACTACCGAGGA 109952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543075923954720