Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1875 140 3e-28 seq6840 131 2e-25 seq584 96.9 3e-15 >seq1875 Length=193106 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || ||||| | |||||||| || ||||| |||||||| | Sbjct 183841 CCACCGCGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGAA 183900 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | | || || | |||||| ||||| |||| | |||||||||||||||||| Sbjct 183901 AGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGGA 183960 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| || ||||| || ||| ||| ||| | ||||| | ||||| Sbjct 183961 ATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCACC 184020 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || | ||||||||| |||||||| || || || || ||||| Sbjct 184021 TCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 >seq6840 Length=28952 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| || | | |||| ||| | || || ||||| || |||||||| || | Sbjct 19602 ACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGA 19661 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | ||||||||| ||| |||| || || |||||||| ||||| Sbjct 19662 TAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGG 19721 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| |||||||| ||||| ||||| ||||| || ||| | ||||||| || || | Sbjct 19722 AATACCTTCTTTGTCTTGAATTTTG-GCTTTCACGTTCTCAATCGTATCACTGGACTCTA 19780 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | ||| | || |||||||| | || || |||||||||||||| Sbjct 19781 CCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 >seq584 Length=457511 Score = 96.9 bits (106), Expect = 3e-15 Identities = 120/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 154592 CAAG-TTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAAT 154650 |||| || ||||| || ||||| || | ||| |||| ||||| || | ||||| | Sbjct 424649 CAAGATTACAAACAGCTATTTCGTCGGGCGAACTATATTCGACAATCTCGGTACACAAGT 424590 Query 154651 TACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGT 154710 | |||||| || || |||||||||| |||||| |||| |||||||||||||||| Sbjct 424589 TGCTGCATTTGATTGTTCCCAGGTTTTGCTGATTGCTTTTGCGATTGCATGCGTCTTTGT 424530 Query 154711 ACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAAT 154753 | | ||| |||| | |||||||| | ||||| || ||||| Sbjct 424529 AAAGCATGAACGGATTCCCCGTTTCAATTTGGGCTTGGATAAT 424487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499518902001520