Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6840 129 6e-25 seq584 105 7e-18 seq3632 86.0 6e-12 >seq6840 Length=28952 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || ||||||||||||||||||| | ||||||| || || ||||||||||| Sbjct 19603 CCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGAT 19662 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | || || || | | | |||||||| || ||||| ||||| Sbjct 19663 AAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGA 19722 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| |||| | ||| | | || | || || | ||||| || Sbjct 19723 ATACCTTCTTTGTC-TTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTAC 19781 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | |||||| || || || || || || ||||| ||||| Sbjct 19782 CTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || |||| | ||||| || || ||||||||||| Sbjct 19831 CCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAT 19890 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | || || || | | | |||||||| || ||||| ||||| Sbjct 19891 AAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGA 19950 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| |||| | ||| | | || | || || | ||||| || Sbjct 19951 ATACCTTCTTTGTC-TTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTAC 20009 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | |||||| || || || ||||| || || |||||||| Sbjct 20010 CTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 >seq584 Length=457511 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 153542 CTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAAT 153601 || |||||| ||||||||| |||| | || ||| || | || | || ||| Sbjct 424714 CTGAAGTTTATCGAAATCAAAGGTGCGCTTTTCCACGTCCACAAAATGACCAAGGGAAAT 424655 Query 153602 AGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCA 153661 || || |||||||| || || | || |||| || || | || ||||||| || Sbjct 424654 GGAAGCAAGATTACAAACAGCTATTTCGTCGGGCGAACTATATTCGACAATCTCGGTACA 424595 Query 153662 GAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTC 153721 | |||||||||||| || |||| |||||||||||||||||||||||||| ||||| Sbjct 424594 CAAGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGATTGCTTTTGCGATTGCATGCGTC 424535 Query 153722 TTTGAAGAGCATGTACGG 153739 |||| | |||||| |||| Sbjct 424534 TTTGTAAAGCATGAACGG 424517 >seq3632 Length=73641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 52344 AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CCACGCTGGCCGAGCGC 52400 || ||||| ||||| |||| ||||||| | |||||| | ||| | || || | Sbjct 31968 AAAGCTCAATGGGCGCTGAACTGGATCG---GTGACACCAAGTCGACGTTTGCGGAAAGA 32024 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 | ||||| | || |||||| || || || || ||||| || ||||| || ||||| Sbjct 32025 CTTGTGGCTTATGCTGCAGTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTC 32084 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | |||| | | || | ||||| || || || || || || ||| | ||| ||| Sbjct 32085 TGGCTTAAGAAGCGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAAGTCGC 32144 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||||| || || ||||||||||| ||| | | |||||| Sbjct 32145 GACGAAGGTCTACATACGGACTTTGCTTGCATGTTGTACAAG 32186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496137354281760