Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1875 113 4e-20 seq584 109 5e-19 seq6576 105 6e-18 seq2814 105 6e-18 seq6840 104 2e-17 seq9259 86.0 6e-12 seq3632 84.2 2e-11 >seq1875 Length=193106 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | || || ||||| || || |||||||| || ||||| ||||| Sbjct 183838 ATTCCACCGCGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCC 183897 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || || || ||| | |||||||| |||||||| || Sbjct 183898 GAAAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGA 183957 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||||||||| || || || || | || | || || ||||| || Sbjct 183958 GGAATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCC 184017 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || || || || | || ||||| || | ||| || ||||| || ||||||| Sbjct 184018 ACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTGCATCG 184069 >seq584 Length=457511 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 ||||||| || | ||| | ||||| || | |||| |||||| ||||||||||| ||||| Sbjct 424486 TATTATCCAAGCCCAAATTGAAACGGGGAATCCGTTCATGCTTTACAAAGACGCATGCAA 424545 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 | |||| ||||||| ||| |||||||||| ||||| || || | || |||| || Sbjct 424546 TCGCAAAAGCAATCAGCAAAACCTGGGAACAATCAAATGCAGCAACTTGTGTACCGAGAT 424605 Query 123707 TATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTT 123759 | ||||||| || |||| || | || || |||||| | ||||| |||| Sbjct 424606 TGTCGAATATAGTTCGCCCGACGAAATAGCTGTTTGTAATCTTGCTTCCATTT 424658 >seq6576 Length=99650 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||||| ||||| ||||| |||||||| ||||| Sbjct 35473 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 35532 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || ||||||||||||| ||||| || Sbjct 35533 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 35592 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || |||||||| || ||| | || | || ||| | || Sbjct 35593 GGAATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCT 35652 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| | ||||| || || | || || || ||||| |||||| Sbjct 35653 ACTTCAAGAGTGATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCATC 35703 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| ||||| ||||| |||||||| ||||| | || | ||| ||| Sbjct 31364 ACGAGATGCAATGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCC 31423 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || ||||||||||||| ||||| || ||||||||||| || |||||| Sbjct 31424 AACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGA 31483 Query 45252 ATTTT 45256 || || Sbjct 31484 ATCTT 31488 >seq2814 Length=333951 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||||| ||||| ||||| |||||||| ||||| Sbjct 220999 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 220940 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || ||||||||||||| ||||| || Sbjct 220939 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 220880 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || |||||||| || ||| | || | || ||| | || Sbjct 220879 GGAATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCT 220820 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| | || || || || | ||| || ||||| || |||||| Sbjct 220819 ACTTCAAGAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATC 220769 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||||| ||||| ||||| |||||||| ||||| Sbjct 221376 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 221317 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || ||||||||||||| ||||| || Sbjct 221316 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 221257 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || |||||||| || ||| | || | || || || ||| Sbjct 221256 GGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCC 221197 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||| || || || | || || ||||| || ||||| Sbjct 221196 ACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||||| ||||| ||||| |||||||| ||||| Sbjct 221604 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 221545 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || ||||||||||||| ||||| || Sbjct 221544 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 221485 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || |||||||| || ||| | || | || || || ||| Sbjct 221484 GGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCC 221425 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||| || || || | || || ||||| || ||||| Sbjct 221424 ACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 >seq6840 Length=28952 Score = 104 bits (114), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 45109 TTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATA 45166 ||||| || ||||| | | ||| |||| ||| | ||||| || || ||||| || || Sbjct 19596 TTATTGACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTA 19655 Query 45167 ATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTC 45226 || | || ||| ||||| || || || || | || | ||||||||||| Sbjct 19656 GTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTC 19715 Query 45227 CGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAG 45285 || ||||| |||||||| ||||||||||| ||| | || | || | || || | Sbjct 19716 TGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTCA-CGTTCTCAATCGTATCACTGG 19774 Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || |||||||| | |||||||||||| || || || || ||||||||||| Sbjct 19775 ACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || || || || | || | ||||||||||| || ||||| |||||||| Sbjct 19902 ATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTT 19961 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||||||||| ||| | || | || | || || ||||| || |||||||| | Sbjct 19962 GTCTTGAATTTTGGCTTTCA-CGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGA 20020 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 |||||||||||| || ||||| || || || |||||| || Sbjct 20021 TCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCATCACG 20061 >seq9259 Length=16035 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| ||||| ||||| |||||||| ||||| | || | ||| ||| Sbjct 15860 ACGAGATGCAATGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCC 15919 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || ||||||||||||| ||||| || |||||||| || || |||||| Sbjct 15920 AACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGA 15979 Query 45252 ATTTT 45256 || || Sbjct 15980 ATCTT 15984 >seq3632 Length=73641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/167 (71%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 138360 ATGTACTCATTGTAATACAAGCACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATA 138419 ||||||| |||| ||| ||| ||||||| || |||| ||||||||||||| || Sbjct 32191 ATGTACT---TGTACAACATGCAAGCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATT 32135 Query 138420 AGTTCGTTGCTAAACGTCAGCCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCC 138479 || || || ||||| || || || ||||| | || |||| | | ||||| || Sbjct 32134 AGCTCATTACTAAATGTTAGACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCA 32075 Query 138480 GCGAAACTGCCCGaaaaaaaaaCGCCTTCGACAATAGCGAAAGCCAC 138526 || ||||| || || || ||||| |||||||| ||| ||||||| Sbjct 32074 GCAAAACTCCCGGAGAAGAAAACTCCTTCGACTGCAGCATAAGCCAC 32028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451889306493680