Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1875 132 1e-25 seq6840 129 1e-24 seq2814 100 7e-16 seq6576 86.0 1e-11 >seq1875 Length=193106 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || ||||||||||| ||||| || | ||||| || | | ||| Sbjct 183847 CGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGAAAGAGTT 183906 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| |||| |||||| |||||||| || | ||||||||||| ||| ||||||| Sbjct 183907 CTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGGAATTCCT 183966 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| |||||| |||| || || | | ||| || || | Sbjct 183967 TCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCACCTCTAGG 184026 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | ||| |||||||| || || Sbjct 184027 GTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTG 184064 >seq6840 Length=28952 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||||||||| || |||| ||||||||||| ||||| | |||||| Sbjct 19846 AGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCT 19905 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || || || ||||| |||||||| ||| ||| |||||| || Sbjct 19906 TCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 19965 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || |||||| || | || || | | ||||| || | |||||||| Sbjct 19966 TGAAT-TTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGT 20024 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || |||||||| || || || Sbjct 20025 TTTGCCGGTAAGTGTTTTCACGAAGATCTG 20054 Score = 120 bits (132), Expect = 7e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| || |||| ||||||||||| ||||| | |||||||||| |||||| || Sbjct 19633 GTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCA 19692 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 || || || ||||| |||||||| ||| ||| |||||| || ||||| ||| || || Sbjct 19693 GCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAAT-TTTGGCTTT 19751 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 |||| || | || || | | ||||| || | |||||||| || || || || || Sbjct 19752 CACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGT 19811 Query 199612 TTTCACAAAAATTTG 199626 ||||| |||||||| Sbjct 19812 CTTCACGAAAATTTG 19826 >seq2814 Length=333951 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| || | ||| |||||||| |||| ||||| |||| ||| || Sbjct 221367 CGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTA 221308 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || || || || | || || ||||| || ||| || Sbjct 221307 CGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCC 221248 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||| || | || || | | || || ||||| Sbjct 221247 TCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAAT 221188 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || | || |||||||| || || Sbjct 221187 GTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTG 221150 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| || | ||| |||||||| |||| ||||| |||| ||| || Sbjct 221595 CGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTA 221536 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || || || || | || || ||||| || ||| || Sbjct 221535 CGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCC 221476 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||| || | || || | | || || ||||| Sbjct 221475 TCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAAT 221416 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || | || |||||||| || || Sbjct 221415 GTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTG 221378 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || || || || ||||||||||||||||| | || ||| | |||||||| ||||||| Sbjct 220899 ATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATATCCAGAAG 220958 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||| | || ||||||||| ||||||| Sbjct 220959 GAGTCAACTTTGCATCTTGTTTTGCGACTTCG 220990 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || || || || ||||||||||||||||| | || ||| | |||||||| ||||||| Sbjct 221048 ATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATATCCAGAAG 221107 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||| | || ||||||||| ||||||| Sbjct 221108 GAGTCAACTTTGCATCTTGTTTTGCGACTTCG 221139 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || || || || ||||||||||||||||| | || ||| | |||||||| ||||||| Sbjct 221276 ATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATATCCAGAAG 221335 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||| | || ||||||||| ||||||| Sbjct 221336 GAGTCAACTTTGCATCTTGTTTTGCGACTTCG 221367 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || || || || ||||||||||||||||| | || ||| | |||||||| ||||||| Sbjct 221504 ATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATATCCAGAAG 221563 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||| | || ||||||||| ||||||| Sbjct 221564 GAGTCAACTTTGCATCTTGTTTTGCGACTTCG 221595 >seq6576 Length=99650 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || || || || ||||||||||||||||| | || ||| | |||||||| ||||||| Sbjct 35573 ATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATATCCAGAAG 35514 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||| | || ||||||||| ||||||| Sbjct 35513 GAGTCAACTTTGCATCTTGTTTTGCGACTTCG 35482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178617114760586