Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6576 109 6e-19 seq1875 109 6e-19 seq2814 105 8e-18 seq9259 82.4 9e-11 >seq6576 Length=99650 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || |||||||| || |||||| ||||||||||| || || | || || | Sbjct 35488 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 35547 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | |||||| || || |||||||| || || ||||| | || | || |||||| Sbjct 35548 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 35607 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| || | || | | ||| ||||| | ||| || || | |||||| Sbjct 35608 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTGATG 35667 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || |||| ||| || || || || ||||| Sbjct 35668 GTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 >seq1875 Length=193106 Score = 109 bits (120), Expect = 6e-19 Identities = 160/225 (71%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||||| | || ||||| || |||||||| || || ||||| | | | Sbjct 183853 CGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGAAAGAGTTCTCCCA 183912 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | |||||| |||||||| ||||| ||||||||||||| || | | || || Sbjct 183913 TCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGGAATTCCTTCTTTA 183972 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| ||| | || | | ||| || |||||||| || | |||||| Sbjct 183973 TCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCACCTCTAGGGTGATG 184032 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACAAA 46603 || |||||||||| || || ||||| || ||||| || ||||| Sbjct 184033 GTCTTGCCCGTCAAAGTCTTCACAAATATCTGCATCGTG-ACAAA 184076 >seq2814 Length=333951 Score = 105 bits (116), Expect = 8e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || |||||||| || |||||| ||||||||||| || || | || || | Sbjct 220984 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 220925 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | |||||| || || |||||||| || || ||||| | || | || |||||| Sbjct 220924 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 220865 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| || | || | | ||| ||||| | ||| || || | |||||| Sbjct 220864 TCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGATG 220805 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || |||| || || ||||| || ||||| || Sbjct 220804 GTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTT 220767 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || |||||||| || |||||| ||||||||||| || || | || || | Sbjct 221361 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 221302 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | |||||| || || |||||||| || || ||||| | || | || ||||||| Sbjct 221301 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221242 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| || | || | | ||| || || | ||||| |||| || || Sbjct 221241 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATC 221182 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || |||| ||| || ||||| || ||||| Sbjct 221181 GTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || |||||||| || |||||| ||||||||||| || || | || || | Sbjct 221589 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 221530 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | |||||| || || |||||||| || || ||||| | || | || ||||||| Sbjct 221529 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221470 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| || | || | | ||| || || | ||||| |||| || || Sbjct 221469 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATC 221410 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || |||| ||| || ||||| || ||||| Sbjct 221409 GTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 >seq9259 Length=16035 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 ||||| || || | | ||| | || ||||||||||| |||||| ||||||||||| Sbjct 15836 TATTTCCCACCACGAAGACGAAGTACGAGATGCAATGTTGACTCCTTCTGGATATTGTAA 15895 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || || | || || | || || | |||||| || || |||||||| || || ||||| Sbjct 15896 TCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCT 15955 Query 46481 GCCGGCACGCTCTCCTTGTC 46500 | || | || ||||||||| Sbjct 15956 GGTGGAATGCCCTCCTTGTC 15975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565095974054160