Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3632 125 7e-24 seq2168 114 1e-20 seq6840 109 5e-19 >seq3632 Length=73641 Score = 125 bits (138), Expect = 7e-24 Identities = 210/300 (70%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 || |||||||| |||||||| |||||||| || || |||| ||| || || || || || Sbjct 31848 GAGTACATTTCGGAGTGTACATTCTCCATTGCAATCTGAATGCCATAGAAACAACGAGCT 31789 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || | | ||| |||||||| ||| || || | ||| ||||| || ||||| || Sbjct 31788 TCTGCGATCTGTACTTCTTGGCTGAATCGTTCCAACAGGTTTTCCAAAACTATGCCATCA 31729 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||||| |||||||| || ||||| | |||||| || || || | || | || Sbjct 31728 CTGGCAGCGAAAAATGCTAGCACATATGAGATGAAGTGCCGTTCCCCAACTTTGAGCCGT 31669 Query 133366 TCCCAGTCGCGCGTG---TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCC 133422 |||||||| ||| || || || || || || || || || ||||||||||| || Sbjct 31668 TCCCAGTCA---GTGAAATCTTTCGAAAGATCGACTTCTTCAACCGTCCAAAACGAAGCG 31612 Query 133423 TCGGCTTTTTTGTACATACT-CCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 | ||||| ||||| || | ||| || || ||| || ||||| | || |||||||| Sbjct 31611 ACCGCTTTCTTGTA-GTATTGCCATATTTCGTCATACTGGATGGGTAGGATTACAAACCG 31553 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 |||| ||| || |||||||||||| ||| | || ||||| | || || || || Sbjct 32186 CTTGTACAACATGCAAGCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATT 32127 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 || || || | || ||||| || || || || || ||||| || || || || ||||| Sbjct 32126 ACTAAATGTTAGACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACT 32067 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 || || ||||| || || ||||| || || ||||||| || | || | ||||| | Sbjct 32066 CCCGGAGAAGAAAACTCCTTCGACTGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGA 32007 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATT 133093 | || |||||||| ||||||||||| Sbjct 32006 CTTGGTGTCACCGATCCAGTTCAGCGCCCATT 31975 >seq2168 Length=109785 Score = 114 bits (126), Expect = 1e-20 Identities = 206/297 (69%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 |||||||||||||||| ||| || | ||||| |||| ||| || || || || || || Sbjct 2495 TACATTTCCGAGTGTATGTTTTCAAACGCGATCTGAATGCCATAGAAACAACGAGCTTCT 2436 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 | |||||||||||| ||| || || | ||| ||||| || ||||| || ||| Sbjct 2435 GGGATCTGCACTTCTTGGCTGAATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTG 2376 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCC 133368 || |||||||| || ||||| | |||||| || || || | || | || ||| Sbjct 2375 GCAGCGAAAAATGCTAGCACATATGAGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCC 2316 Query 133369 CAGTCGCGCGTG---TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||| ||| || || || || || || || ||| ||||||||||| || | Sbjct 2315 CAGTC---AGTGAAATCTTTCGAAAGATCGACTTCTTCGGGCGTCCAAAACGAAGCGACC 2259 Query 133426 GCTTTTTTGTACATACT-CCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 ||||| ||||| || | ||| || || ||| || ||||| | || |||||||| Sbjct 2258 GCTTTCTTGTA-GTATTGCCATATTTCGTCATACTGGATGGGTAGGATTACAAACCG 2203 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 |||| ||| || ||| |||||||| ||| | ||||||||||| | || || || || Sbjct 2836 CTTGTACAACATGCAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATT 2777 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 || || || | || ||||| || || || || || ||||| || || || || ||||| Sbjct 2776 ACTAAATGTTAGACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACT 2717 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 || || ||||| || || ||||| || || ||||||| || | || | ||||| | Sbjct 2716 CCCGGAGAAGAAAACTCCTTCGACCGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGA 2657 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATT 133093 | || |||||||| ||||||||||| Sbjct 2656 CTTGGTGTCACCGATCCAGTTCAGCGCCCATT 2625 >seq6840 Length=28952 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || |||||||| ||||| |||| || ||| ||| Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19770 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | |||| ||||| | |||||||| || ||||| | ||||| Sbjct 19769 GATACGATTGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCA 19711 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| || ||||| ||| |||| || | || || | |||||||| Sbjct 19710 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAA 19651 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 |||||| || || | || | ||||| || ||||||| Sbjct 19650 CATCCAGAAAGAGTCAACCTTACATTTAGTTTTGCGTTT 19612 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || |||||||| ||||| |||| || ||| ||| Sbjct 20057 ATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19998 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | |||| ||||| | |||||||| || ||||| | ||||| Sbjct 19997 GATACGATTGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCA 19939 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| || ||||| ||| |||| || | || || | |||||||| Sbjct 19938 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAA 19879 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || || |||| || || ||||| || ||| Sbjct 19878 CATCCAGAAAGAGTCGACTCTACACTTGGTTCTTCGT 19842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500046768958720