Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq309 156 2e-32 seq6840 102 3e-16 seq386 102 3e-16 seq1875 96.9 1e-14 seq1344 95.1 5e-14 >seq309 Length=278515 Score = 156 bits (172), Expect = 2e-32 Identities = 460/700 (66%), Gaps = 17/700 (2%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| |||||| | || || || | || ||||| ||||||| ||| | ||||| Sbjct 121074 GCGATTGGGATTGATTTGGGCACTACTTACTCTTGTGTTGGTGTTTTTCAACACGGAAAG 121015 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTT----T 451029 || |||||||| || || |||||||| || || || || || | || ||| | Sbjct 121014 GTTGAAATTATTGCGAACGACCAAGGCAATCGTACAACGCC--CA--GTTATGTTGCATT 120959 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAAT--CAATGGTAAATTCAAATGCC 451087 || || | ||| | || | || | ||||| ||| ||| | || || || Sbjct 120958 CACAGACACCGAACGTCTGATTGGTGACGCTGCGAAAAACCAAGTGGCCATG--AACCCC 120901 Query 451088 AAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGA-TGATGATACTGT 451146 || ||||| || | ||| || ||||| | ||||| ||| || | | |||| | | || Sbjct 120900 AACAACACCGTTTTTGACGCCAAACGCCTCATTGGTCGTC-GTTTCAGTGATCCTTCAGT 120842 Query 451147 ACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATAT 451206 | || ||| || || | ||| || | | | || | || || | || Sbjct 120841 CACATCTGATCGCAAACACTGGTCGTTTGAGGTTATCTCTGAGAACGATAAACCGAAGAT 120782 Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 || || | ||||| || || | || || || | ||||||| ||||| |||||| | Sbjct 120781 TCGTGTGGAGTATAAGGGCGAGATGAAGACATTCTCAGCTGAAGAGATTTCCTCTATGAT 120722 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 || | |||||||||||| || ||| ||| | || ||| || ||||| || Sbjct 120721 ACTGATGAAAATGAAAGAAGTTGCCGAAGGATACCTGGGAAAGAAAGTGACGGATGCCGT 120662 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 | ||||| |||||||| ||||| || || ||||||||||| || ||||| || Sbjct 120661 GGTCACTGTGCCCGCTTACTTCAACGACAGTCAGCGGCAAGCAACGAAGGATGCTGGTGC 120602 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 |||| ||||| | |||||| | || || || || || || || || |||||| | || || Sbjct 120601 TATTTCTGGTCTTAATGTTTTGCGCATAATCAACGAGCCCACGGCTGCTGCTATTGCCTA 120542 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 ||| || ||| || ||| | | |||| || | | | ||||| || ||||| Sbjct 120541 TGGGCT-GGATAA--AAAGGTCGGTGGAGAACGCAACGTGCTCATCTTTGACTTGGGTGG 120485 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 ||||| |||| ||| | ||| | || ||||| || || ||||| || || | || Sbjct 120484 CGGAACCTTTGATGTCTCTATTCTTACTATCGAAGACGGTGTGTTTGAGGTGAAATCGAC 120425 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 | ||| || ||||| ||||| ||||||||| |||| ||| Sbjct 120424 CGCTGGGGACACTCACCTAGGCGGTGAAGATTTTGACAAT 120385 Score = 109 bits (120), Expect = 2e-18 Identities = 405/632 (64%), Gaps = 2/632 (0%) Strand=Plus/Minus Query 451862 TTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAGGAGGTTCT 451921 |||| |||| | ||||| ||| || | || |||| ||||| || || || ||||| Sbjct 120129 TTACGTGATGCAAAAATGGACAAAAATCAGATCCATGAGATTGTTCTCGTTGGTGGTTCG 120070 Query 451922 ACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTTGGAGGAAAACAACTATGT 451981 ||||| ||||| ||| | || | |||| || || || || || | Sbjct 120069 ACACGTATTCCGAAAGTACAGAAGTTGTTACAGGATTTCTTCAACGGTAAGGAATTGAAC 120010 Query 451982 AAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTA 452041 ||| | ||||| || || ||||| |||||||||||||| || |||||||| || || Sbjct 120009 AAGTCAATCAATCCCGACGAGGCTGTGGCATATGGTGCTGCTGTGCAAGCAGCCATCCTG 119950 Query 452042 ACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCT 452101 | ||| | ||| | || | || ||| | ||||| ||||||| || Sbjct 119949 AGCGGTGACAAGTCTGAGGCGGTGCAGGACTTGCTCTTACTGGATGTGGCACCTCTTTCA 119890 Query 452102 CTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATT 452161 | || | || || || ||||| | |||||| | || || || || | || Sbjct 119889 TTGGGTCTGGAGACGGCCGGTGGTGTTATGACTGCCCTGATCAAGAGAAACACAACAATA 119830 Query 452162 CCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATT 452221 || |||| | | ||| || || | || ||||||||| || || || || Sbjct 119829 CCCACTAAACAAACTCAGACTTTCACCACTTATTCTGATAACCAGCCTGGCGTTTTGATA 119770 Query 452222 CAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACT 452281 || |||| || || || ||||||||||| |||| || ||| || || | ||| Sbjct 119769 CAGGTGTACGAGGGTGAGCGTGCAATGACCAGAGACAACAATTTGCTCGGGAAGTTTGAA 119710 Query 452282 CTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTT 452341 || || ||| ||||| || |||| || || || || | || | ||| | Sbjct 119709 CTGTCTGGCATCCCTCCGGCACCTCGGGGTGTGCCCCAGATCGAGGTGACGTTTGACATA 119650 Query 452342 GATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAA-ATCATCTGGAAAATCAGAAAA 452400 ||||| || |||||||| |||||| |||||||| || | || |||||||| | | || Sbjct 119649 GATGCGAACGGTATTCTGAATGTGTCAGCAGTTGATAAGAGCA-CTGGAAAACAAAATAA 119591 Query 452401 AATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGA 452460 ||||| || || || || || || | || ||||||||||| || ||||| | Sbjct 119590 GATTACGATCACGAACGACAAGGGGCGCCTGTCGAAAGAAGATATCGATCGCATGGTTGC 119531 Query 452461 TGAAGCAGAAAAATTCAAGGATGATGATGAAC 452492 ||| ||||| | | ||||| |||||||||| Sbjct 119530 TGACGCAGAGAGGTACAAGGCGGATGATGAAC 119499 >seq6840 Length=28952 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||||| || || ||||| || ||||| || || || || | Sbjct 20057 ATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19998 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | ||| ||||||||||| || ||||| |||||||| || || Sbjct 19997 GATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 19938 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| ||||||| | || || || | |||||||| | ||||| | || || || Sbjct 19937 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAAC 19878 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || | || || ||||| || Sbjct 19877 ATCCAGAAAGAGTCGACTCTACACTTGGT 19849 Score = 98.7 bits (108), Expect = 4e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || ||||| || ||||| || || || || | Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19770 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | ||| ||||||||||| || ||||| |||||||| || || Sbjct 19769 GATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 19710 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| ||||||| | || || || | |||||||| | ||||| | || || || Sbjct 19709 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAAC 19650 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | || || |||| | || ||||| || Sbjct 19649 ATCCAGAAAGAGTCAACCTTACATTTAGTTTT 19618 >seq386 Length=588428 Score = 102 bits (112), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 |||| | ||||||||| | ||||| || |||||||||||| | | || || ||||| | Sbjct 117873 CAGTCATTGATGCAGTTGTCACTGTACCAGCTTATTTCAATAACACCCAGCGCCAAGCTA 117814 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 | || || || ||| |||||| ||||| ||||| ||||| | || | |||||| || | Sbjct 117813 CCAAGGACGCCGGAATTATTGCCGGTTTGAATGTGCTTCGGGTAATCAGTGAACCAACTG 117754 Query 451431 CAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAG 451490 | || || | || || ||| ||| ||| ||||| | | | ||| ||| || | | Sbjct 117753 CGGCCGCAATCGCTTACGGATTAGACAAAACAAAAAAGA---AGGAATGTAATGTTCTTG 117697 Query 451491 TATTTGATTTTGGTGGAGGAAC 451512 | | |||| | |||||||| || Sbjct 117696 TGTATGATCTCGGTGGAGGTAC 117675 >seq1875 Length=193106 Score = 96.9 bits (106), Expect = 1e-14 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || || || || || || || || ||||| || Sbjct 184067 ATGCAGATATTTGTGAAGACTTTGACGGGCAAGACCATCACCCTAGAGGTGGAATCTTCG 184008 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || || || || ||||| |||||||||||||| || || Sbjct 184007 GATACGATCGAGAATGTGAAGGCTAAGATACAGGATAAAGAAGGAATTCCTCCCGACCAG 183948 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || |||||| | ||||| || | || ||||| |||||| | ||||||| ||| Sbjct 183947 CAGCGATTGATTTTCGCCGGGAAGCAGTTGGAGGATGGGAGAACTCTTTCGGATTACAAT 183888 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 183887 ATTCAGAAGGA 183877 >seq1344 Length=146228 Score = 95.1 bits (104), Expect = 5e-14 Identities = 249/378 (66%), Gaps = 8/378 (2%) Strand=Plus/Plus Query 451890 AAATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGT 451949 ||||| ||||||| || || || || ||||| || ||||||| ||| ||| | | | | Sbjct 79610 AAATTCATGAAATCGTACTCGTCGGTGGTTCGACGAGAATTCCAAAAGTTCGAAAATTAT 79669 Query 451950 TGTCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTG 452009 || | ||| ||||| || | || | ||||| ||||||||||| | Sbjct 79670 TGCAAGAATTTTTCAATGGAAAGGAATTGAACAAATCAATCAATCCAGATGAAGCTGTGG 79729 Query 452010 CATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGG-- 452067 | || ||||| |||||||| || |||||| | | || |||| | | | || || Sbjct 79730 CTTACGGTGCAGCAGTTCAGGCTGCTATTTTGA---GTGGAGAT-AAGTCAGATGTGGTT 79785 Query 452068 --AGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGA 452125 |||||| |||| | ||||| || |||||||| |||||| | |||||||| ||||| Sbjct 79786 CAGGATATTTTGTTGCTGGATGTGACTCCTCTATCCCTTGGATTAGAAACAGCCGGTGGT 79845 Query 452126 ATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTT 452185 | |||||| | |||||||| ||| | || || ||| ||| |||| || Sbjct 79846 GTTATGACTCCGCTTATTAAACGCAACACTACGATACCAACAAAACAGACACAAATTTTC 79905 Query 452186 AGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCA 452245 | || ||| | || || ||||| || ||||| | || || ||||| || Sbjct 79906 ACCACGTATTCAGATTATCAGCCCGGTGTGTTGATACAAGTTTACGAGGGTGAACGAGCT 79965 Query 452246 ATGACACGAGATAATAAT 452263 ||||| || ||||| ||| Sbjct 79966 ATGACCCGGGATAACAAT 79983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975208122565064