Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3632 84.2 3e-11 >seq3632 Length=73641 Score = 84.2 bits (92), Expect = 3e-11 Identities = 197/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 119322 AGACGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGA 119381 |||||||||| ||| |||| | ||||| ||||| || | ||||| || || ||| Sbjct 32344 AGACGATCGGCAACAAACTCCACATATTGACACATCAATTTACAGTTCATGCCGATCAGA 32285 Query 119382 TTACACGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGAT 119440 | ||||| | |||||| || ||| | | ||| | | ||||| ||||||| ||| Sbjct 32284 CTG-ACGGGCAAAGCATCAGAGAAGAACTGATGCTCTACTTGAACAGCATCTTTCATGAT 32226 Query 119441 GGAGTGAA-TAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAA 119499 | | | | ||| || |||| || || || | | | || ||||| |||| Sbjct 32225 TGCTAGCACTCGTTCCT-TCGAGGGCTTCTTCTTTATGTACTTGTACAACATGCAAGCAA 32167 Query 119500 ATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCA 119559 | || ||| || ||||| || ||| || ||||||||||| || || || |||| Sbjct 32166 AGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGACCTGGCA 32107 Query 119560 TGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAA 119611 | ||||| | ||||| ||||| ||||| ||| |||||| || || ||||| Sbjct 32106 TCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAA 32055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588827592772400