Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1875 163 6e-35 seq6576 145 2e-29 seq2814 145 2e-29 seq6840 134 3e-26 seq9259 104 5e-17 >seq1875 Length=193106 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| || || ||||| || || || |||||||||||||| | ||||||||||||||| Sbjct 183855 CAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGAAAGAGTTCTCCCATC 183914 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | |||||| || ||||| || | ||| || ||||| |||||||| |||||||| || Sbjct 183915 CTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGGAATTCCTTCTTTATC 183974 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || ||| || ||||| || || |||||| |||||| || ||||| | || Sbjct 183975 CTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCACCTCTAGGGTGATGGT 184034 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||||||| || || || | ||||| Sbjct 184035 CTTGCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 >seq6576 Length=99650 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||||||||| || | ||| ||||| || || ||||||||||| | | || | Sbjct 35485 AGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGA 35544 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | |||||| || || || || | ||||||||||||||| ||||||||||| Sbjct 35545 CCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCC 35604 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || || || |||||||| || || ||| |||||||| || Sbjct 35605 TTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTG 35664 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||| || || ||||| | ||||| Sbjct 35665 ATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Score = 111 bits (122), Expect = 3e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || ||||||||||| | | || | |||||||| | |||||| || Sbjct 31376 GTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCC 31435 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | ||||||||||||||| ||||||||||| ||||||||||| || || Sbjct 31436 GCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTCGCTTTC 31495 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || |||||||| || || | |||||||| | || | ||||| Sbjct 31496 ACATTCTCAATCGTATCACTAGCCTCCACTTCTAATGTTATCGTCT 31541 >seq2814 Length=333951 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||||||||| || | ||| ||||| || || ||||||||||| | | || | Sbjct 220987 AGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGA 220928 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | |||||| || || || || | ||||||||||||||| ||||||||||| Sbjct 220927 CCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCC 220868 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || || || ||||| || || || ||| |||||||| || Sbjct 220867 TTGTCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTG 220808 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||||||| || || || | ||||| Sbjct 220807 ATGGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCAT 220770 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||||||||| || | ||| ||||| || || ||||||||||| | | || | Sbjct 221364 AGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGA 221305 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | |||||| || || || || | ||||||||||||||| |||||||| || Sbjct 221304 CCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCC 221245 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || || || |||||||| || || | |||||||| | || Sbjct 221244 TTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTT 221185 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || ||||| || || || || | ||||| Sbjct 221184 ATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||||||||| || | ||| ||||| || || ||||||||||| | | || | Sbjct 221592 AGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGA 221533 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | |||||| || || || || | ||||||||||||||| |||||||| || Sbjct 221532 CCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCC 221473 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || || || |||||||| || || | |||||||| | || Sbjct 221472 TTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTT 221413 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || ||||| || || || || | ||||| Sbjct 221412 ATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||||||||| || | ||| ||||| || || ||||||||||| | | || | Sbjct 221136 AGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGA 221077 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 |||||||| | |||||| || || || || | ||||||||||||||| |||||||| Sbjct 221076 CCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 221021 >seq6840 Length=28952 Score = 134 bits (148), Expect = 3e-26 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||| |||||||| || || ||||| || | | ||| | |||||||| Sbjct 19848 AACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTC 19907 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || || || || || ||||| |||||||||||||| |||||||||||||| Sbjct 19908 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTG 19967 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||| || ||||||||||| || | | | || || || || || || | ||| Sbjct 19968 AATTTTGGCTTTCACGTTCTCAATCGTATCACTGGAC--TCTACCTCGAGAGTGATCGTT 20025 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| ||||| | ||||| Sbjct 20026 TTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Score = 125 bits (138), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | || | || |||||||| || || ||||| || | | ||| | ||||| Sbjct 19617 CAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATC 19676 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | |||||| || || || || || ||||| |||||||||||||| ||||||||||| Sbjct 19677 TTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTC 19736 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACC 195105 ||||||||| || ||||||||||| || | | | || || || || || || | | Sbjct 19737 TTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGAC--TCTACCTCGAGAGTGATC 19794 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || | || || ||||| | |||||| Sbjct 19795 GTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 >seq9259 Length=16035 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || ||||||||||| | | || | |||||||| | |||||| || Sbjct 15872 GTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCC 15931 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | ||||||||||||||| |||||||| || ||||||||||| || || Sbjct 15932 GCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCTTTC 15991 Query 195064 ACGTTCTCAATGGTGTC 195080 || |||||||| || || Sbjct 15992 ACATTCTCAATCGTATC 16008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109195049333186