Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6840 109 4e-19 seq2814 102 5e-17 >seq6840 Length=28952 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || |||||||| ||||| ||||| || | | || |||| || Sbjct 19848 AACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTC 19907 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||| || || ||||| ||||| |||||||||||| | || | || || ||||| Sbjct 19908 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTG 19967 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||| ||| | |||| |||| || ||| || |||| || || ||||| Sbjct 19968 AATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTT 20027 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||| ||||||||||| Sbjct 20028 GCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | | || |||| |||| ||| || || ||||| Sbjct 19639 TCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAA 19698 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| |||||||||||| | || | || || ||||| ||| || ||| ||| Sbjct 19699 ATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTC 19758 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| |||| || ||| || |||| || || ||||| || || || |||||||| Sbjct 19759 TCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACG 19818 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 19819 AAAATTTGCATA 19830 >seq2814 Length=333951 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || || | | || |||| |||| ||| || || |||||| Sbjct 221337 TCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAAT 221278 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | |||||| |||||| | || | ||||||||||| ||||||| ||| || || Sbjct 221277 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCAC--AT 221220 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| |||| ||||| || || | ||||| || || || || | ||||||| Sbjct 221219 TCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCA 221160 Query 34969 CAAAGATCTGCATA 34982 |||| ||||||||| Sbjct 221159 CAAATATCTGCATA 221146 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || || | | || |||| |||| ||| || || |||||| Sbjct 221565 TCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAAT 221506 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | |||||| |||||| | || | ||||||||||| ||||||| ||| || || Sbjct 221505 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCAC--AT 221448 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| |||| ||||| || || | ||||| || || || || | ||||||| Sbjct 221447 TCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCA 221388 Query 34969 CAAAGATCTGCATA 34982 |||| ||||||||| Sbjct 221387 CAAATATCTGCATA 221374 Score = 98.7 bits (108), Expect = 6e-16 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || || | | || |||| |||| ||| || || |||||| Sbjct 220960 TCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAAT 220901 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | |||||| |||||| | || | || |||||||| ||||||| ||| || || Sbjct 220900 ATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTCGCTTTCAC--AT 220843 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || | ||| || || || | || ||||| || || || | |||||||| Sbjct 220842 TCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGATGGTCTTCCCAGTCAAAGTCTTCA 220783 Query 34969 CAAAGATCTGCATATTC 34985 |||| |||||||| ||| Sbjct 220782 CAAATATCTGCATCTTC 220766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324553845437424