Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3632 167 3e-36 seq2168 149 7e-31 >seq3632 Length=73641 Score = 167 bits (184), Expect = 3e-36 Identities = 410/627 (65%), Gaps = 36/627 (6%) Strand=Plus/Minus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 ||| || || ||||| || |||||| || ||||| | |||||| | |||||| || Sbjct 32181 ACAACATGCAAGCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAA 32122 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 |||||| ||| ||||||||||| | || || | |||||| || | |||||| || | Sbjct 32121 ATGTTAGACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGG 32062 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 | ||||| | ||||| ||||| ||| |||| || |||||||| || | | | | Sbjct 32061 AGAAGAAAACTCCTTCGACTGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGACTTGG 32002 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 | | | ||||| ||||| ||||| | ||| || || |||||| || | | Sbjct 32001 TGTCACCGATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGGA 31942 Query 19193 TAGAATTAAATAGATA---------------------------CATACGCTCA------- 19218 | |||||||||| | || | ||||| Sbjct 31941 CTGCATTAAATAGAAAATCCCTGTACAATAAACGACAATCAACCAGATGCTCACTTTTCT 31882 Query 19219 TCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCT 19278 | || |||||| | ||||| |||||| | | | ||||||||| || || | ||| || Sbjct 31881 TTTGGATCTTTGATATATGTATCTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCC 31822 Query 19279 ATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAAT 19338 || || ||||||| || || ||||| | ||||||| ||||||||||| | ||| Sbjct 31821 ATTGCAATCTGAATGCCATAGAAACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAAT 31762 Query 19339 CTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGT 19398 | ||| | || ||||| |||||| |||||||| || || |||||||||| |||| | Sbjct 31761 CGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATAT 31702 Query 19399 TTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTTTAGATAA 19457 || || || ||| | | || | || ||| ||| | | |||||| || | Sbjct 31701 GAGATGAAGTGCCGTTC-CCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAG 31643 Query 19458 ATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATC 19517 ||| ||||||||||| |||||||| ||||| | ||||| || || | |||||| || Sbjct 31642 ATCGACTTCTTCAACCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTC 31583 Query 19518 ACGATATTGTATAGGAAATATAACAAA 19544 ||| || || || | || ||||| Sbjct 31582 GTCATACTGGATGGGTAGGATTACAAA 31556 >seq2168 Length=109785 Score = 149 bits (164), Expect = 7e-31 Identities = 407/627 (65%), Gaps = 36/627 (6%) Strand=Plus/Minus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 ||| || || ||||| || |||||| |||||||| | | |||| | |||||| || Sbjct 2831 ACAACATGCAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAA 2772 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 |||||| ||| ||||||||||| | || || | |||||| || | |||||| || | Sbjct 2771 ATGTTAGACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGG 2712 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 | ||||| | ||||| || || ||| |||| || |||||||| || | | | | Sbjct 2711 AGAAGAAAACTCCTTCGACCGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGACTTGG 2652 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 | | | ||||| ||||| ||||| | ||| || || |||||| || | | Sbjct 2651 TGTCACCGATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGAA 2592 Query 19193 TAGAATTAAATAGA-------TAC-----------------ATACGC----------TCA 19218 | | |||||||||| ||| ||| || || Sbjct 2591 TTGCATTAAATAGAAAATCCCTACACGAAAAACGACAGACAATAGGCTACTTACTTTTCT 2532 Query 19219 TCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCT 19278 | | |||||| | ||||| |||||| | | || ||||||||| || || || ||||| Sbjct 2531 TTCGGATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCA 2472 Query 19279 ATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAAT 19338 | || ||||||| || || ||||| | ||||||| ||||| ||||| | ||| Sbjct 2471 AACGCGATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAAT 2412 Query 19339 CTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGT 19398 | ||| | || ||||| |||||| |||||||| || || |||||||||| |||| | Sbjct 2411 CGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATAT 2352 Query 19399 TTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTTTAGATAA 19457 || || || ||| | | || | || ||| ||| | | |||||| || | Sbjct 2351 GAGATGAAGTGCCGTTC-CCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAG 2293 Query 19458 ATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATC 19517 ||| |||||||| |||||||| ||||| | ||||| || || | |||||| || Sbjct 2292 ATCGACTTCTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTC 2233 Query 19518 ACGATATTGTATAGGAAATATAACAAA 19544 ||| || || || | || ||||| Sbjct 2232 GTCATACTGGATGGGTAGGATTACAAA 2206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561967162635120