Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3632 86.0 7e-12 seq2168 86.0 7e-12 >seq3632 Length=73641 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 65435 ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCT 65494 ||||| |||||||||||||||| ||||| |||||| || || || |||||||| |||| Sbjct 32413 ACGCGGAGAATCCATTTGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAATTTCT 32472 Query 65495 TTGAGAAGCGAGTTGGGGACTA 65516 ||||||| || ||||| || || Sbjct 32473 TTGAGAAACGGGTTGGAGATTA 32494 >seq2168 Length=109785 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 65435 ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCT 65494 ||||| |||||||||||||||| ||||| |||||| || || ||||||||||| |||| Sbjct 3065 ACGCGGAGAATCCATTTGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAATTTCT 3124 Query 65495 TTGAGAAGCGAGTTGGGGACTA 65516 | |||| || |||||||| || Sbjct 3125 TCGAGAGACGGGTTGGGGATTA 3146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596419279375040