Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq19793 125 2e-24 >seq19793 Length=3268 Score = 125 bits (138), Expect = 2e-24 Identities = 237/346 (68%), Gaps = 31/346 (9%) Strand=Plus/Minus Query 39910 CTGGAGTTTTCCGCTAA-GTTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATC 39968 ||||| |||||| | | | | ||||| ||| |||||| | || |||||||||||| Sbjct 3111 CTGGAATTTTCCAATTATGATCCCCTGTTGGGGCGAGGAGAGT--TC-CATGAAGGCATC 3055 Query 39969 GAAGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGT 40028 ||||||||| ||||| |||| ||||| | ||||||||| ||||| || |||||||| Sbjct 3054 GAAGTTCACCGAGGCACAGATCGCGTTTGTTTTGAAGCAGGCGGAGGACGGGACGCCGGT 2995 Query 40029 CGCAAAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGG---AAGAA 40085 || || ||||||| ||||| || ||||| | ||| | | || ||||||| ||||| Sbjct 2994 TGCCGAGGTCTGCCGGAAGGCGGGCATCAGTGACGCGACGTTCTACAACTGGCGCAAGAA 2935 Query 40086 G--------------------CGATATG--GCGGCTAAAGCAGCTTGAGGACGAGAATGC 40123 | || ||| |||||| ||||| ||||| ||||| || Sbjct 2934 GTACGCCGGCCTGATGCCATCGGAGATGAAGCGGCTGCGCCAGCTCGAGGAAGAGAACGC 2875 Query 40124 CCGACTGAAGAAGATCGTGGCCGACCTGACGCTCGACCGCGAGATGTTGAAGGACGTCAT 40183 | |||||| |||||| ||||||||| | | ||| | ||| || | ||||| | Sbjct 2874 CAAGCTGAAGCGGATCGTCGCCGACCTGTCTTTGGACAAAGCCATGCTGCAAGACGTGCT 2815 Query 40184 CCGCCGAA-AACTCTGAGGCCTTTCCGGAAGCGACAGCTCGTCGAC 40228 ||| || | ||||||||||| ||| || || | || |||||| Sbjct 2814 -CGCAAAAGAGCTCTGAGGCCTGGCCGCAAACGCGAACTTGTCGAC 2770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128586812001228