Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1875 107 3e-18 seq6576 93.3 6e-14 seq2168 87.8 3e-12 >seq1875 Length=193106 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||| || || || || || |||| || ||| ||| Sbjct 184067 ATGCAGATATTTGTGAAGACTTTGACGGGCAAGACCATCACCCTAGAGGTGGAATCTTCG 184008 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||| ||| ||||| ||||||||||| || ||||| || || Sbjct 184007 GATACGATCGAGAATGTGAAGGCTAAGATACAGGATAAAGAAGGAATTCCTCCCGACCAG 183948 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||||| ||||| |||||| | || ||| |||||| | || ||||| ||| Sbjct 183947 CAGCGATTGATTTTCGCCGGGAAGCAGTTGGAGGATGGGAGAACTCTTTCGGATTACAAT 183888 Query 156003 AT 156004 || Sbjct 183887 AT 183886 >seq6576 Length=99650 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 155856 ACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAA 155915 || || ||||||||||| || | | ||||| ||| || |||||| || || ||| Sbjct 31539 ACGATAACATTAGAAGTGGAGGCTAGTGATACGATTGAGAATGTGAAAGCGAAGATTCAA 31480 Query 155916 GATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAA 155975 || || |||||||| || ||||| |||||| ||||||| | ||| || |||||| | ||| Sbjct 31479 GACAAGGAAGGCATTCCACCAGACCAACAACGATTGATATTTGCGGGGAAGCAGTTGGAA 31420 Query 155976 GATACCAGAACTTTATCAGATTATAATAT 156004 ||| | || || || ||||| ||||| Sbjct 31419 GATGGTCGTACGTTGTCTGATTACAATAT 31391 >seq2168 Length=109785 Score = 87.8 bits (96), Expect = 3e-12 Identities = 186/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 |||||||| | |||||| ||||| || || || | | | | |||||||| || |||||| Sbjct 2537 TTTTCTTTCGGATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATG 2478 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATATTGAATC--TCG 18526 |||| | || ||||||| | ||| || | | ||| || ||||| | | | | | Sbjct 2477 TTTTCAAACGCGATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGG 2418 Query 18527 CTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCC 18586 || |||| ||| | || || || |||||| || ||| | ||||||||||| Sbjct 2417 CTG---AATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCT 2361 Query 18587 AAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCT 18646 | |||||| ||||| || ||| | | ||||| | ||| ||| | |||| Sbjct 2360 AGCACATATGAGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCT 2301 Query 18647 TTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 || || ||||| |||||||| | |||||||| || Sbjct 2300 TTCGAAAGATCGACTTCTTCGGGCGTCCAAAACGA 2266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731687586552800