Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2814 143 5e-29 seq1875 113 9e-20 seq6840 109 1e-18 seq2168 102 2e-16 seq3632 93.3 8e-14 >seq2814 Length=333951 Score = 143 bits (158), Expect = 5e-29 Identities = 178/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || || || | ||| ||||| | ||| || |||||| |||||| Sbjct 220999 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 220940 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| ||||| || || || ||||| || |||| ||||| || ||| Sbjct 220939 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 220880 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || ||| ||||| || | ||| | |||| Sbjct 220879 GGAATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCT 220820 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT--ATTAG 192544 ||||| ||||| ||||| || ||||| || || || | |||||||||||| || || || Sbjct 220819 ACTTCAAGAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTTCAATAAG 220760 Query 192545 AAA 192547 ||| Sbjct 220759 AAA 220757 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || || || | ||| ||||| | ||| || |||||| |||||| Sbjct 221376 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 221317 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| ||||| || || || ||||| || |||| ||||| || ||| Sbjct 221316 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 221257 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | ||| | || Sbjct 221256 GGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCC 221197 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || || |||||||| || || || | |||||||||||| Sbjct 221196 ACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || || || | ||| ||||| | ||| || |||||| |||||| Sbjct 221604 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 221545 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| ||||| || || || ||||| || |||| ||||| || ||| Sbjct 221544 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 221485 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | ||| | || Sbjct 221484 GGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCC 221425 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || || |||||||| || || || | |||||||||||| Sbjct 221424 ACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 >seq1875 Length=193106 Score = 113 bits (124), Expect = 9e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| || | |||| |||| ||||| || || || || || || |||| | Sbjct 183886 ATATTGTAATCCGAAAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGC 183945 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || |||||||||||||| ||||| ||| || ||||| || | | Sbjct 183946 TGCTGGTCGGGAGGAATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTA 184005 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||||| || ||||| || ||||| || || || || || || | |||||||||| Sbjct 184006 TCCGAAGATTCCACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTGC 184065 Query 192535 AT 192536 || Sbjct 184066 AT 184067 >seq6840 Length=28952 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | | ||| || ||||||||||| || | |||||| ||| || || ||||| Sbjct 19602 ACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGA 19661 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || |||| ||||| || || |||||||| |||| | || || || || || Sbjct 19662 TAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGG 19721 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| ||||| ||| || || || | ||| || ||||| Sbjct 19722 AATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTAC 19781 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || || | || || | || || ||||| Sbjct 19782 CTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 >seq2168 Length=109785 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||| || ||||||| |||||||||| || ||| | ||||||||||| |||| Sbjct 2823 CAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATGTTAGA 2764 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 |||||||| | ||| | ||| |||||||| || |||| |||||||| | || ||||| Sbjct 2763 CCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAA 2704 Query 49944 ATACCCTCGAC 49954 | || ||||| Sbjct 2703 ACTCCTTCGAC 2693 >seq3632 Length=73641 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||| || ||||||| ||| ||||| | | ||| | ||||||||||| |||| Sbjct 32173 CAAGCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGA 32114 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 |||||||| | ||| | ||| |||||||| || |||| |||||||| | || ||||| Sbjct 32113 CCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAA 32054 Query 49944 ATACCCTCGAC 49954 | || ||||| Sbjct 32053 ACTCCTTCGAC 32043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984225734043300