Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2814 132 9e-26 seq6840 118 2e-21 seq1875 118 2e-21 seq3632 98.7 2e-15 seq2168 98.7 2e-15 >seq2814 Length=333951 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || | ||| ||||| | ||| || ||||| ||||| Sbjct 220999 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 220940 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || ||||| || || || ||||| || |||| |||||||| ||| Sbjct 220939 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 220880 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || ||| ||||| || ||||| | |||| Sbjct 220879 GGAATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCT 220820 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| ||||| || ||||| || || || | ||||||||||| || Sbjct 220819 ACTTCAAGAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTT 220767 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || | ||| ||||| | ||| || ||||| ||||| Sbjct 221376 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 221317 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || ||||| || || || ||||| || |||| |||||||| ||| Sbjct 221316 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 221257 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| ||||| || ||||| | || Sbjct 221256 GGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCC 221197 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || || |||||||| || || || | ||||||||||| Sbjct 221196 ACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || | ||| ||||| | ||| || ||||| ||||| Sbjct 221604 ATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCA 221545 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || ||||| || || || ||||| || |||| |||||||| ||| Sbjct 221544 GACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGT 221485 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| ||||| || ||||| | || Sbjct 221484 GGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCC 221425 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || || |||||||| || || || | ||||||||||| Sbjct 221424 ACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 >seq6840 Length=28952 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || |||| ||| | |||||| || || || || Sbjct 19828 ATACCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCA 19887 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | || ||||| || || ||||||||||||| | || ||||| || Sbjct 19888 GATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGA 19947 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||| || || || ||||| || ||| Sbjct 19948 GGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCT 20007 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| || || | |||||| | ||| |||||||| Sbjct 20008 ACCTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | | || || ||||||||||| || | |||||| || || || || || Sbjct 19602 ACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGA 19661 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || ||||| || || ||||||||||||| | || ||||| || || Sbjct 19662 TAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGG 19721 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||| ||||| ||||| ||| || || || ||||| || ||||| Sbjct 19722 AATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTAC 19781 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || ||||| || || | || || | ||| || ||||| Sbjct 19782 CTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 >seq1875 Length=193106 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| || | || || | || ||||| || || || || ||||| |||| Sbjct 183885 AATATTGTAATCCGAAAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCG 183944 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || || |||||||||||||| ||||| ||| || ||||| || || Sbjct 183945 CTGCTGGTCGGGAGGAATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGT 184004 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || ||||| || ||||| || ||||| || || || || || || | |||||||| Sbjct 184005 ATCCGAAGATTCCACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTG 184064 Query 172067 CAT 172069 ||| Sbjct 184065 CAT 184067 >seq3632 Length=73641 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || ||||| |||||||||| ||||||||| | | ||| | ||||||||||| |||| Sbjct 32173 CAAGCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGA 32114 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 |||||||| | ||| | ||| |||||||| || |||| |||||||| | || ||||| Sbjct 32113 CCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAA 32055 >seq2168 Length=109785 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || ||||| |||||||||| || ||||||| || ||| | ||||||||||| |||| Sbjct 2823 CAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATGTTAGA 2764 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 |||||||| | ||| | ||| |||||||| || |||| |||||||| | || ||||| Sbjct 2763 CCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAA 2705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904907928356400