Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5095 118 3e-21 >seq5095 Length=57080 Score = 118 bits (130), Expect = 3e-21 Identities = 267/399 (67%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 302496 TCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTCATATC 302555 ||| || ||||| || | |||||| | || || | | ||||| || || ||| Sbjct 13188 TCCATCCTCGCCATACCGAAGCTGAATTAATTGATTAATCTGATTTCGGACAGTTCCATC 13247 Query 302556 ATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGT 302615 || |||||| | |||||| ||||| | |||||||||||| ||||| || Sbjct 13248 GTATTTAATCATGACTGATTCCATGGCTTTGATCAGACGACGCTGAATGTAACCTGTCTC 13307 Query 302616 AGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAG 302675 | ||| ||||| || ||||| || | || | ||||| ||||| ||||||||||| | Sbjct 13308 GGCTGTCTTTACCGCAGTATCGATCAAGCCTTCCCGACCGCCCATGGCATGGAAGAAAAA 13367 Query 302676 CTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGA 302735 || |||| || || | | | | ||| ||||||||||||| || | ||| || Sbjct 13368 TTCAGTCGGTGTAAGACCAGCCAGATAAGAGTTCTCAACGAAACCTCGAGACTCTGGACC 13427 Query 302736 ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTT 302795 || || || | || |||||||| || | || | | ||| |||| || || || Sbjct 13428 ATAATCATCCTGAATGAAATGTGGCAGCGTACGGTGGCGAAAACCGAATGGTATTCGTTT 13487 Query 302796 TCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCC 302855 || || ||||| ||||| |||| |||| || | || || ||||| | | | | || Sbjct 13488 ACCTTCTACGTTTTGCTGACCCACACACGCGATAACTTGAGAGATATTGATA-CGCGACC 13546 Query 302856 C-TTGGAGCCAGCATTTACCATAATAACAAACCTGTTAT 302893 | |||||||||||| ||||||||| || |||||| Sbjct 13547 CTTTGGAGCCAGCAACGACCATAATATTGAAGTTGTTAT 13585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471437467229246