Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq817 89.7 6e-12 seq7673 87.8 2e-11 seq3271 86.0 8e-11 >seq817 Length=193299 Score = 89.7 bits (98), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATC 1254404 || ||||| || ||| | || || || || ||||| ||||| || |||| ||| Sbjct 180129 GCAAGTTCACCAGGCAGCAACAAACGAACCGCCGTCTGAATCTCTCTGCTCGTG---ATC 180073 Query 1254405 GTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 || ||||| || |||| || ||||||| | ||||| | || || |||| ||| Sbjct 180072 GTTGACCGCTTATTGTAGTGGGCAAGACGGCTCGACTCGGCAGCAATACGCTCGAAAATG 180013 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 || || |||||||| ||||||| |||||||| ||| |||||||| ||| || || Sbjct 180012 TCATTCACAAACGAATTCATGATCGACATCGCCTTCGATGAGATGCCGGTGTCCGGATGA 179953 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 || || ||||||||||| ||| Sbjct 179952 ACTTGGCGCAGCACCTTGTATATG 179929 >seq7673 Length=23730 Score = 87.8 bits (96), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470 ||||| || |||| || ||||||| | ||||| | ||||| |||| ||||| || Sbjct 12863 CGCTTATTGTAGTGGGCAAGACGGCTCGACTCGGCAGCAATGCGCTCGAAAATGTCATTC 12922 Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 |||||||| ||||||| |||||||| ||| |||||||| ||| || || || || Sbjct 12923 ACAAACGAATTCATGATCGACATCGCCTTCGATGAGATGCCGGTGTCCGGATGAACTTGG 12982 Query 1254531 TTGAGCACCTTGTAGATG 1254548 ||||||||||| ||| Sbjct 12983 CGCAGCACCTTGTATATG 13000 >seq3271 Length=79543 Score = 86.0 bits (94), Expect = 8e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1254412 GCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGA 1254471 ||||||| ||||| | ||||||| | ||||| | ||||| ||| |||||||| | Sbjct 70722 GCTTGTTGTAGTGCACAAGACGGCTTGACTCGGCAGCAATGCGCCCGAAAATGTCGTTCA 70781 Query 1254472 CAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCT 1254531 |||||||||||||| ||||||| ||| | ||| || || ||||| || |||| Sbjct 70782 CAAACGAGTTCATGGTCGACATCCCCTTCTAGGAAATACCAGTATCGGGATGAGCCTGAC 70841 Query 1254532 TGAGCACCTTGTAGATG 1254548 | ||||||||||||| Sbjct 70842 GCAACACCTTGTAGATG 70858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105484940120086