Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1875 131 2e-25 seq6840 125 6e-24 seq6576 123 2e-23 seq2814 118 1e-21 seq584 109 5e-19 seq3632 87.8 2e-12 seq2168 82.4 7e-11 >seq1875 Length=193106 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||| ||| | || || | || || || || || || || || || ||| | Sbjct 184070 ACGATGCAGATATTTGTGAAGACTTTGACGGGCAAGACCATCACCCTAGAGGTGGAATCT 184011 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || || ||||| || || ||||||||||| |||||||| Sbjct 184010 TCGGATACGATCGAGAATGTGAAGGCTAAGATACAGGATAAAGAAGGAATTCCTCCCGAC 183951 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||| || |||||||| ||| |||||||| ||||| | || ||||| Sbjct 183950 CAGCAGCGATTGATTTTCGCCGGGAAGCAGTTGGAGGATGGGAGAACTCTTTCGGATTAC 183891 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||||||||| || || |||| |||| ||||||| || Sbjct 183890 AATATTCAGAAGGAATCGACTCTCCATCTGGTTCTGCGCCTGCGCGGTGG 183841 >seq6840 Length=28952 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || ||||| ||||| || || ||||| ||||| ||| Sbjct 20058 GATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAG 19999 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || |||| ||| | ||| || |||||||||||||| || ||||| || | Sbjct 19998 TGATACGATTGAGAACGTGAAAGCCAAA-ATTCAAGACAAAGAAGGTATTCCTCCAGACC 19940 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | |||||| | || ||||| || || ||| |||| ||| | | | || || || | Sbjct 19939 AGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACA 19880 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||| || || || ||||| ||||||||||| Sbjct 19879 ACATCCAGAAAGAGTCGACTCTACACTTGGT 19849 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||||| ||||| ||||| || || ||||| ||||| ||| Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19770 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| | ||| || |||||||||||||| || ||||| || || Sbjct 19769 GATACGATTGAGAACGTGAAAGCCAAA-ATTCAAGACAAAGAAGGTATTCCTCCAGACCA 19711 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | || ||||| || || ||| |||| ||| | | | || || || || Sbjct 19710 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAA 19651 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || |||| || || ||||| || ||||| || Sbjct 19650 CATCCAGAAAGAGTCAACCTTACATTTAGTTTTGCGTTTACGCGGTGG 19603 >seq6576 Length=99650 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || ||| | || || ||||| || || || ||||||||||||| Sbjct 35703 GATGCAGATTTTCGTGAAGACGTTGACTGGGAAAACCATCACTCTTGAAGTAGAAGCCAG 35644 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || ||| ||||| |||||||| ||||| || || || || || Sbjct 35643 CGATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCA 35584 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| ||||| ||||| ||||| ||| |||| ||| | | |||| ||||| || Sbjct 35583 ACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAA 35524 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || | || | || |||||| | || || || Sbjct 35523 TATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGG 35476 >seq2814 Length=333951 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || | || || || || || || || ||||||||||||| Sbjct 220769 GATGCAGATATTTGTGAAGACTTTGACTGGGAAGACCATCACTCTTGAAGTAGAAGCCAG 220828 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || ||| ||||| |||||||| ||||| || || || || || Sbjct 220829 CGATACGATCGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCA 220888 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| ||||| ||||| ||||| ||| |||| ||| | | |||| ||||| || Sbjct 220889 ACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAA 220948 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || | || | || |||||| | || || || Sbjct 220949 TATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGG 220996 >seq584 Length=457511 Score = 109 bits (120), Expect = 5e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 139079 AAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGG 139138 |||| || || | || || || || | ||||||||| || ||||||||||| |||| Sbjct 424658 AAATGGAAGCAAGATTACAAACAGCTATTTCGTCGGGCGAACTATATTCGACAATCTCGG 424599 Query 139139 CACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAG 139198 |||||| || || || ||||| || || | ||||| ||||||||||| || || || | Sbjct 424598 TACACAAGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGATTGCTTTTGCGATTGCATG 424539 Query 139199 CATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 | |||||||||||||| |||| | || ||||| | ||| Sbjct 424538 CGTCTTTGTAAAGCATGAACGGATTCCCCGTTTCAATTTG 424499 >seq3632 Length=73641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 126031 GTCGCTTTCGCTATAGTGGAAGGCGTGTTTTTCTCGGGTAGTTTTGCGGCTAtttttttt 126090 || |||| ||| ||| ||||| || || ||||| || |||||||| || || || | Sbjct 32028 GTGGCTTATGCTGCAGTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTCTGG 32087 Query 126091 ATAAAGACAAAGGGTATAATGCCCGGTCTAACGTTCAGCAACGAGTTGATTTCTCGTGAC 126150 | |||| ||| | ||||| |||||||| || || || ||| | || ||| ||| Sbjct 32088 CTTAAGAAGCGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAAGTCGCGAC 32147 Query 126151 GAAGGACTCCATACGGACTTTGCATGTCTGTATTACAA 126188 ||||| || |||||||||||||| || ||| ||||| Sbjct 32148 GAAGGTCTACATACGGACTTTGCTTGCATGTTGTACAA 32185 >seq2168 Length=109785 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126046 GTGGAAGGCGTGTTTTTCTCGGGTAGTTTTGCGGCTAttttttttATAAAGACAAAGGGT 126105 || ||||| || || ||||| || |||||||| || || || | | |||| ||| Sbjct 2693 GTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTCTGGCTTAAGAAGCGGGGA 2752 Query 126106 ATAATGCCCGGTCTAACGTTCAGCAACGAGTTGATTTCTCGTGACGAAGGACTCCATACG 126165 | ||||| |||||||| || || || ||| | || |||| ||||| || || |||||| Sbjct 2753 CTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAACTCGGGACGAGGGCCTACATACG 2812 Query 126166 GACTTTGCATGTCTGTATTACAA 126188 |||||||| || ||| ||||| Sbjct 2813 GACTTTGCCTGCATGTTGTACAA 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449784237052240