Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq817 105 1e-16 seq3281 91.5 2e-12 seq100 91.5 2e-12 seq8822 87.8 3e-11 >seq817 Length=193299 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || || || | || ||||| || ||| Sbjct 180173 TGTACTTGGTCACCGCCTTCGTCCCCTCCGAAACTGCATGTTTCGCAAGTTCACCAGGCA 180114 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||| ||||| | | | |||||| ||||| || | Sbjct 180113 GCAACAAACGAACCGCCGTCTGAATCTCTCTGCTCGTGATCGTTGACCGCTTATTGTAGT 180054 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| | ||||| | || || |||| ||||| || |||||||| |||| Sbjct 180053 GGGCAAGACGGCTCGACTCGGCAGCAATACGCTCGAAAATGTCATTCACAAACGAATTCA 179994 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || |||||||| ||| || || || || |||||||||| Sbjct 179993 TGATCGACATCGCCTTCGATGAGATGCCGGTGTCCGGATGAACTTGGCGCAGCACCTTGT 179934 Query 1485710 A 1485710 | Sbjct 179933 A 179933 >seq3281 Length=215141 Score = 91.5 bits (100), Expect = 2e-12 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || ||||| ||| | || ||||| || ||| Sbjct 178531 TGTACTTCGTCACCGCCTTCGTCCCCTCCGAAACGGCATGCTTCGCAAGTTCACCAGGCA 178590 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||| ||||| | | | |||||| ||||| || | Sbjct 178591 GCAACAAACGAACAGCCGTCTGAATCTCTCTGCTCGTGATCGTTGACCGCTTATTGTAGT 178650 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| | ||||| | || || || | || || || |||||||| |||| Sbjct 178651 GAGCAAGACGGCTAGACTCGGCAGCAATACGCTCAAAGATATCATTCACAAACGAATTCA 178710 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | |||||||||| || || || || ||| || || ||||| | |||||||| Sbjct 178711 TAATCGACATCGCCTTCGATGAAATACCAGTGTCAGGATGAACCTGGCGCAACACCTTGT 178770 Query 1485710 AAA 1485712 ||| Sbjct 178771 AAA 178773 >seq100 Length=391815 Score = 91.5 bits (100), Expect = 2e-12 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || || || || ||| | || ||||| || | | Sbjct 360041 TGTACTTGGTGACTGCCTTGGTGCCTTCAGAAACCGCATGCTTCGCAAGTTCACCAGGGA 360100 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||| || || | | ||| || | | || | || | Sbjct 360101 GAAGCAAACGCACAGCCGTCTGTATTTCCCTACTTGTGATGGT-TGACTTTTTGTTGTAC 360159 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| |||| ||| || | | | ||||| |||| || ||||| ||||| || ||| Sbjct 360160 TGTGCCAGTCGGCTGGCTTCCGCGGCAATGCGTTCGAAAATATCGTTTACAAAGGAATTC 360219 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| | ||| ||||| || |||||| || || || || || ||| Sbjct 360220 ATGATGGACATTGCTTTAGACGAGATACCAGTGTCGGGATGAACTTGACGCAGAACTTTG 360279 Query 1485709 TAAA 1485712 |||| Sbjct 360280 TAAA 360283 >seq8822 Length=19069 Score = 87.8 bits (96), Expect = 3e-11 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || || || ||| | || ||||| || ||| Sbjct 18234 TGTACTTCGTCACCGCCTTCGTCCCCTCCGAAACTGCATGCTTCGCAAGTTCACCAGGCA 18293 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||| ||||| | | | |||||| ||||| || | Sbjct 18294 GCAACAAACGAACAGCCGTCTGAATCTCTCTGCTCGTGATCGTTGACCGCTTATTGTAGT 18353 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| | ||||| | || || || | || || || |||||||| |||| Sbjct 18354 GAGCAAGACGGCTAGACTCGGCAGCAATACGCTCAAAGATATCATTCACAAACGAATTCA 18413 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | |||||||||| || || || || ||| || || ||||| | |||||||| Sbjct 18414 TAATCGACATCGCCTTCGATGAAATACCAGTGTCAGGATGAACCTGGCGCAACACCTTGT 18473 Query 1485710 AAA 1485712 ||| Sbjct 18474 AAA 18476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914102101599362