Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2814 93.3 3e-14 seq6840 89.7 3e-13 seq1875 87.8 1e-12 >seq2814 Length=333951 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || || || || | | || |||| |||| ||||| || || || Sbjct 221338 CTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAA 221279 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| |||||| |||||| | || | ||||||||||| | || || ||| || | Sbjct 221278 TATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCAC--A 221221 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || |||| ||| | ||||| || || | ||||| ||||| || || | ||||| Sbjct 221220 TTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTC 221161 Query 34964 ACAAAGATCTGCAT 34977 ||||| |||||||| Sbjct 221160 ACAAATATCTGCAT 221147 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || || || || | | || |||| |||| ||||| || || || Sbjct 221566 CTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAA 221507 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| |||||| |||||| | || | ||||||||||| | || || ||| || | Sbjct 221506 TATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCAC--A 221449 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || |||| ||| | ||||| || || | ||||| ||||| || || | ||||| Sbjct 221448 TTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTC 221389 Query 34964 ACAAAGATCTGCAT 34977 ||||| |||||||| Sbjct 221388 ACAAATATCTGCAT 221375 >seq6840 Length=28952 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| ||||| |||| | || |||| |||| ||||| || || || Sbjct 19866 CTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAA 19925 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || |||||||||||| | || | || || ||||| | ||||| ||| ||| Sbjct 19926 AATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTT 19985 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| ||| ||| ||| || || | || || || || || || || || || || Sbjct 19986 CTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCAC 20045 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 20046 GAAGATCTGCAT 20057 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| ||||| |||| | || |||| |||| ||||| || || || Sbjct 19638 CTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAA 19697 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || |||||||||||| | || | || || ||||| | ||||| ||| ||| Sbjct 19698 AATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTT 19757 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| ||| ||| ||| || || | || || || || || || || ||||| || Sbjct 19758 CTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCAC 19817 Query 34966 AAAGATCTGCAT 34977 || || ||||| Sbjct 19818 GAAAATTTGCAT 19829 >seq1875 Length=193106 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | || | ||| ||||| || | || ||||||||||| || || |||| Sbjct 183839 TTCCACCGCGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCG 183898 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | |||| |||| ||||| |||||||| |||| ||| |||||||| | | Sbjct 183899 AAAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAG 183958 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || || || || | ||| || || || || || |||| || | || Sbjct 183959 GAATTCCTTCTTTATCCTGTATCTTAGCCTTCAC--ATTCTCGATCGTATCCGAAGATTC 184016 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||| |||||||| ||||| | ||||| ||||| |||||||| Sbjct 184017 CACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325612785217802