Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq6576 114 2e-20 seq2814 105 1e-17 >seq6576 Length=99650 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || || ||||| || ||| |||| |||||| | || Sbjct 35701 TGCAGATTTTCGTGAAGACGTTGACTGGGAAAACCATCACTCTTGAAGTAGAAGCCAGCG 35642 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || ||| || |||||||||||||| || |||| Sbjct 35641 ATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAAC 35582 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| || || || || || ||| | | ||||| | ||||| |||| Sbjct 35581 AACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATA 35522 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || || || ||| | ||| | || || ||| | | || |||| Sbjct 35521 TCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTA 35474 >seq2814 Length=333951 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || || || || || || ||| |||| |||||| | || Sbjct 220771 TGCAGATATTTGTGAAGACTTTGACTGGGAAGACCATCACTCTTGAAGTAGAAGCCAGCG 220830 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| || || ||| || |||||||||||||| || |||| Sbjct 220831 ATACGATCGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAAC 220890 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| || || || || || ||| | | ||||| | ||||| |||| Sbjct 220891 AACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATA 220950 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || || || ||| | ||| | || || ||| | | || |||| Sbjct 220951 TCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTA 220998 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || || || || || || || | || || || || | Sbjct 221148 TGCAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGTG 221207 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || ||| || || ||||||||||| || |||| Sbjct 221208 ATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAAC 221267 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| || || || || || ||| | | ||||| | ||||| |||| Sbjct 221268 AACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATA 221327 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || || || ||| | ||| | || || ||| | | || |||| Sbjct 221328 TCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTA 221375 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || || || || || || || | || || || || | Sbjct 221376 TGCAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGTG 221435 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || ||| || || ||||||||||| || |||| Sbjct 221436 ATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAAC 221495 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| || || || || || ||| | | ||||| | ||||| |||| Sbjct 221496 AACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATA 221555 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || || || ||| | ||| | || || ||| | | || |||| Sbjct 221556 TCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTA 221603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785968305721360